Detailed information NTG0874168

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RB532_RS20685
• Genome accession: NZ_CP133445
• Coordinates: 4241671..4242471 (+)
• Length: 266 a.a.
• NCBI ID: WP_002888947.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain AR3365-Yvys
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4236671..4247471

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RB532_RS20650 (RB532_20620)	gspH	4236827..4237342 (+)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-
RB532_RS20655 (RB532_20625)	gspI	4237339..4237704 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
RB532_RS20660 (RB532_20630)	gspJ	4237701..4238297 (+)	597	WP_004222700.1	type II secretion system minor pseudopilin GspJ	-
RB532_RS20665 (RB532_20635)	gspK	4238294..4239280 (+)	987	WP_004222697.1	type II secretion system minor pseudopilin GspK	-
RB532_RS20670 (RB532_20640)	gspL	4239267..4240460 (+)	1194	WP_004191957.1	type II secretion system protein GspL	-
RB532_RS20675 (RB532_20645)	-	4240453..4240938 (+)	486	WP_004151943.1	type II secretion system protein M	-
RB532_RS20680 (RB532_20650)	-	4240928..4241674 (+)	747	WP_004145897.1	type II secretion system protein N	-
RB532_RS20685 (RB532_20655)	pilD	4241671..4242471 (+)	801	WP_002888947.1	A24 family peptidase	Machinery gene
RB532_RS20690 (RB532_20660)	hrpB	4242519..4244948 (-)	2430	WP_029884482.1	ATP-dependent helicase HrpB	-
RB532_RS20695 (RB532_20665)	thpR	4245021..4245557 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
RB532_RS20700 (RB532_20670)	sfsA	4245557..4246273 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
RB532_RS20705 (RB532_20675)	dksA	4246436..4246891 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=874168 RB532_RS20685 WP_002888947.1 4241671..4242471(+) (pilD) [Klebsiella pneumoniae strain AR3365-Yvys]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=874168 RB532_RS20685 WP_002888947.1 4241671..4242471(+) (pilD) [Klebsiella pneumoniae strain AR3365-Yvys]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425