Detailed information NTG0874086

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RDY86_RS00055
• Genome accession: NZ_CP133440
• Coordinates: 9363..10154 (+)
• Length: 263 a.a.
• NCBI ID: WP_004722684.1
• Uniprot ID: -
• Organism: Yersinia ruckeri strain Barren Creek
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4363..15154

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RDY86_RS00020 (RDY86_00020)	gspG	4579..5046 (+)	468	WP_038244546.1	type II secretion system major pseudopilin GspG	-
RDY86_RS00025 (RDY86_00025)	-	5091..5645 (+)	555	WP_004722675.1	GspH/FimT family pseudopilin	-
RDY86_RS00030 (RDY86_00030)	gspI	5642..6004 (+)	363	WP_038244547.1	type II secretion system minor pseudopilin GspI	-
RDY86_RS00035 (RDY86_00035)	gspJ	6001..6606 (+)	606	WP_038251265.1	type II secretion system minor pseudopilin GspJ	-
RDY86_RS00040 (RDY86_00040)	gspK	6596..7681 (+)	1086	WP_230596563.1	type II secretion system minor pseudopilin GspK	-
RDY86_RS00045 (RDY86_00045)	gspL	7683..8882 (+)	1200	WP_004722681.1	type II secretion system protein GspL	-
RDY86_RS00050 (RDY86_00050)	gspM	8866..9363 (+)	498	WP_230596562.1	type II secretion system protein GspM	-
RDY86_RS00055 (RDY86_00055)	pilD	9363..10154 (+)	792	WP_004722684.1	A24 family peptidase	Machinery gene
RDY86_RS00060 (RDY86_00060)	gspS	10174..10548 (-)	375	WP_004722686.1	type II secretion system pilot lipoprotein GspS	-
RDY86_RS00065 (RDY86_00065)	gbpA	10974..12464 (+)	1491	WP_038275444.1	N-acetylglucosamine-binding protein GbpA	-
RDY86_RS00070 (RDY86_00070)	-	12584..13966 (+)	1383	WP_038275442.1	PepSY domain-containing protein	-

Sequence

Protein

• Length: 263 a.a.
• Molecular weight: 29629.85 Da
• Isoelectric Point: 8.4833

>NTDB_id=874086 RDY86_RS00055 WP_004722684.1 9363..10154(+) (pilD) [Yersinia ruckeri strain Barren Creek]
MDALYMAQMIAPLWWGGLAVLGLCVGSFLNVAIYRLPLMLTRENPHGFNLCLPHSHCPQCKHSLKWRDNIPVFSWLFLQG
QCRYCRASIPVRYPLVEIMTMLMTLFIAAVIPLGSPLLAALLLSWMLIALTMIDIDHLLLPDNLTLPLLWMGLLFHLFDS
RLALSEAVIGAVAGYLILWCLYWSFWLLTKREALGYGDFKLLAALGAWLGWMALPSLLLIASLCGMSFALAARLLRGRPL
NTALPFGPFLAFGGWILFLQYYR

Nucleotide

• Length: 792 bp

>NTDB_id=874086 RDY86_RS00055 WP_004722684.1 9363..10154(+) (pilD) [Yersinia ruckeri strain Barren Creek]
ATGGATGCGCTCTATATGGCTCAAATGATAGCGCCACTGTGGTGGGGCGGGCTGGCGGTTCTTGGCCTGTGTGTCGGTAG
TTTTCTCAACGTCGCTATTTATCGGCTACCGCTGATGTTAACCCGCGAAAATCCGCATGGTTTTAATCTGTGTCTACCTC
ATTCCCACTGTCCTCAGTGTAAACATTCGTTGAAATGGCGAGATAATATTCCTGTATTCAGTTGGCTATTCCTGCAAGGA
CAATGTCGTTACTGTCGGGCATCTATCCCAGTGCGCTACCCGCTGGTTGAAATCATGACGATGTTGATGACCTTGTTTAT
TGCTGCAGTCATCCCATTGGGCAGCCCGTTACTGGCCGCACTACTACTCAGTTGGATGCTGATCGCGTTAACCATGATCG
ATATTGACCACTTGCTCTTACCGGATAATCTGACATTGCCTCTGCTATGGATGGGGCTACTTTTTCACCTGTTTGATAGT
CGGTTGGCATTAAGTGAGGCAGTGATTGGTGCTGTCGCAGGATATTTGATCTTATGGTGTCTTTACTGGTCGTTCTGGCT
GTTGACGAAGCGGGAAGCTCTGGGCTACGGAGACTTTAAGTTATTAGCCGCATTAGGTGCCTGGCTAGGATGGATGGCGT
TACCCTCTTTACTTTTGATCGCCTCGCTCTGCGGCATGAGTTTCGCACTGGCCGCACGTCTCCTACGGGGCAGACCACTG
AATACGGCACTGCCATTCGGGCCGTTTCTCGCATTCGGTGGCTGGATTCTATTCCTTCAGTACTACCGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (122-229)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-109)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.181	96.578	0.494
pilD	Vibrio campbellii strain DS40M4	46.667	96.958	0.452
pilD	Neisseria gonorrhoeae MS11	44.531	97.338	0.433
pilD	Acinetobacter baumannii D1279779	42.471	98.479	0.418
pilD	Acinetobacter nosocomialis M2	42.085	98.479	0.414