Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   WJ438_RS34495 Genome accession   NZ_CP149447
Coordinates   7313226..7313888 (-) Length   220 a.a.
NCBI ID   WP_406728682.1    Uniprot ID   -
Organism   Streptomyces sp. GD-15H     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7308226..7318888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJ438_RS34475 (WJ438_34455) - 7308964..7309794 (-) 831 WP_406728679.1 alpha/beta fold hydrolase -
  WJ438_RS34480 (WJ438_34460) sigJ 7309964..7310854 (+) 891 WP_406729898.1 RNA polymerase sigma factor SigJ -
  WJ438_RS34485 (WJ438_34465) - 7311027..7311788 (+) 762 WP_406728680.1 GntR family transcriptional regulator -
  WJ438_RS34490 (WJ438_34470) - 7311899..7313056 (-) 1158 WP_406728681.1 ROK family protein -
  WJ438_RS34495 (WJ438_34475) vraR 7313226..7313888 (-) 663 WP_406728682.1 response regulator Regulator
  WJ438_RS34500 (WJ438_34480) - 7313918..7314232 (-) 315 Protein_6805 sensor histidine kinase -
  WJ438_RS34505 - 7314116..7314409 (+) 294 Protein_6806 hypothetical protein -
  WJ438_RS34510 (WJ438_34490) - 7314412..7315136 (+) 725 Protein_6807 ABC transporter permease -
  WJ438_RS34515 (WJ438_34495) - 7315192..7315356 (+) 165 WP_406728683.1 hypothetical protein -
  WJ438_RS34520 (WJ438_34500) - 7316070..7317830 (+) 1761 WP_406729899.1 sodium:solute symporter family transporter -
  WJ438_RS34525 (WJ438_34505) - 7317840..7317968 (+) 129 WP_406728684.1 putative transporter small subunit -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23443.07 Da        Isoelectric Point: 4.8604

>NTDB_id=874009 WJ438_RS34495 WP_406728682.1 7313226..7313888(-) (vraR) [Streptomyces sp. GD-15H]
MPVSVLLVDDEPLVRAGLRAVLETQPDIEVVGEAADGAAVIPLVRQLRPDVVAMDVRMPLMDGIEATRAVLRTVEDPPKI
IVVTTFEQDEYVYEALRAGADGFLLKRARPAEIVHAVRLVAEGESLLFPASVRQLAAEYGESGGNRAARAVLDRAGLTGR
EAEVLRLMARGLSNAEISGRLVVGVETVKSHVSAVLAKLGARDRTQAVIVAYESGFVGLG

Nucleotide


Download         Length: 663 bp        

>NTDB_id=874009 WJ438_RS34495 WP_406728682.1 7313226..7313888(-) (vraR) [Streptomyces sp. GD-15H]
ATGCCGGTCAGCGTTCTGCTCGTCGACGACGAACCCCTTGTACGCGCGGGCCTGCGGGCCGTGCTGGAAACGCAGCCAGA
CATCGAGGTCGTCGGGGAGGCAGCCGACGGGGCGGCGGTGATTCCGCTGGTACGGCAGCTGCGTCCGGATGTCGTCGCGA
TGGACGTACGCATGCCGCTCATGGACGGCATCGAGGCCACCCGCGCCGTGCTGCGGACGGTCGAGGATCCGCCGAAGATC
ATCGTGGTGACGACGTTCGAGCAGGACGAGTACGTGTACGAGGCGCTGCGCGCGGGTGCCGACGGGTTTCTGCTGAAGCG
GGCGCGCCCCGCCGAGATCGTGCACGCGGTGCGGCTGGTCGCCGAGGGCGAGTCGCTGCTGTTCCCCGCGTCGGTCCGGC
AGTTGGCCGCGGAGTACGGCGAGAGCGGCGGCAACCGTGCGGCGCGGGCCGTGCTGGACCGGGCGGGACTGACCGGTCGG
GAGGCGGAGGTGCTGCGGCTGATGGCGCGGGGCCTGTCGAACGCGGAGATCTCCGGTCGGCTGGTGGTGGGGGTGGAGAC
GGTGAAGTCACATGTGAGCGCCGTGCTGGCGAAGTTGGGGGCGCGTGACCGTACGCAGGCGGTGATCGTGGCGTACGAGT
CGGGTTTCGTGGGGCTCGGGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(157-211)

Response regulator receiver domain (Response_reg)

(5-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.639

99.545

0.405
  degU Bacillus subtilis subsp. subtilis str. 168

37.168

100

0.382