Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   WJ438_RS31580 Genome accession   NZ_CP149447
Coordinates   6687368..6688009 (+) Length   213 a.a.
NCBI ID   WP_406728246.1    Uniprot ID   -
Organism   Streptomyces sp. GD-15H     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6682368..6693009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJ438_RS31570 (WJ438_31535) - 6684996..6685724 (-) 729 WP_406728245.1 transglycosylase SLT domain-containing protein -
  WJ438_RS31575 (WJ438_31540) - 6686198..6687375 (+) 1178 Protein_6234 GAF domain-containing sensor histidine kinase -
  WJ438_RS31580 (WJ438_31545) vraR 6687368..6688009 (+) 642 WP_406728246.1 response regulator Regulator
  WJ438_RS31585 (WJ438_31550) - 6688206..6688451 (+) 246 WP_406728247.1 chaplin -
  WJ438_RS31590 (WJ438_31555) - 6688544..6689331 (-) 788 Protein_6237 hypothetical protein -
  WJ438_RS31595 (WJ438_31560) - 6689484..6690281 (+) 798 WP_406728248.1 ABC transporter ATP-binding protein -
  WJ438_RS31600 (WJ438_31565) - 6690387..6690818 (+) 432 WP_406728249.1 NfeD family protein -
  WJ438_RS31605 (WJ438_31570) - 6691009..6691956 (+) 948 WP_109383202.1 SPFH domain-containing protein -
  WJ438_RS31610 (WJ438_31575) - 6692097..6692603 (-) 507 WP_406728250.1 HNH endonuclease -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 22956.25 Da        Isoelectric Point: 5.6052

>NTDB_id=874005 WJ438_RS31580 WP_406728246.1 6687368..6688009(+) (vraR) [Streptomyces sp. GD-15H]
MADAIRVLLVDDHQVVRRGLRTFLEVQDDIEVVGEAADGAEGVALAGELRPDVILMDVRMPGMDGVEALRRLRELDHPAR
VLIVTSFTEQRTVVPALRAGAAGYVYKDIDPDALAGAIRSVHAGHVLLQAEVAGALLAQEETHSGQGRAGSLTEREREVL
GLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGLSG

Nucleotide


Download         Length: 642 bp        

>NTDB_id=874005 WJ438_RS31580 WP_406728246.1 6687368..6688009(+) (vraR) [Streptomyces sp. GD-15H]
GTGGCTGACGCGATCAGGGTGCTGCTCGTCGACGACCACCAGGTGGTCCGCCGAGGCCTGCGCACCTTTCTGGAGGTGCA
GGACGACATCGAGGTCGTCGGCGAGGCGGCGGACGGTGCCGAAGGAGTCGCCCTCGCCGGGGAGCTGCGGCCCGACGTGA
TCCTGATGGACGTCAGGATGCCGGGCATGGACGGCGTGGAGGCCCTGCGCCGGCTCCGCGAACTGGACCACCCCGCGCGC
GTGCTGATCGTCACCAGCTTCACCGAGCAGCGCACCGTGGTCCCGGCCCTGCGTGCGGGCGCCGCCGGATACGTGTACAA
GGACATCGACCCCGACGCGCTCGCCGGAGCCATCCGCTCGGTGCACGCCGGGCACGTCCTCCTCCAGGCCGAGGTCGCCG
GCGCCCTGCTGGCCCAGGAGGAGACTCATTCCGGCCAGGGCCGTGCCGGTTCGCTCACGGAGCGGGAGCGTGAGGTGCTC
GGTCTCATAGCGGACGGCCGCTCCAACCGGGAGATAGCCCGCGCCCTGGTCCTCTCCGAGAAGACCGTGAAGACGCATGT
CTCGAACATCCTGATGAAGCTCGACCTGGCGGACCGCACCCAGGCCGCCCTGTGGGCGGTGCGCCACGGCCTGAGCGGCT
GA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(151-206)

Response regulator receiver domain (Response_reg)

(7-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

47.17

99.531

0.469
  degU Bacillus subtilis subsp. subtilis str. 168

38.462

100

0.399