Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   WJ438_RS18195 Genome accession   NZ_CP149447
Coordinates   3901733..3903142 (+) Length   469 a.a.
NCBI ID   WP_406726191.1    Uniprot ID   -
Organism   Streptomyces sp. GD-15H     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3896733..3908142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJ438_RS18180 (WJ438_18165) - 3897722..3898654 (-) 933 WP_406726189.1 Ppx/GppA family phosphatase -
  WJ438_RS18185 (WJ438_18170) - 3898750..3899598 (+) 849 WP_406726190.1 hypothetical protein -
  WJ438_RS18190 (WJ438_18175) - 3899705..3901512 (-) 1808 Protein_3610 BACON domain-containing protein -
  WJ438_RS18195 (WJ438_18180) radA 3901733..3903142 (+) 1410 WP_406726191.1 DNA repair protein RadA Machinery gene
  WJ438_RS18200 (WJ438_18185) disA 3903384..3904508 (+) 1125 WP_406726192.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  WJ438_RS18205 (WJ438_18190) - 3904582..3905584 (+) 1003 Protein_3613 IS5 family transposase -
  WJ438_RS18210 (WJ438_18195) - 3905677..3906522 (-) 846 WP_406726193.1 hypothetical protein -
  WJ438_RS18215 (WJ438_18200) - 3906856..3907805 (+) 950 Protein_3615 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49796.86 Da        Isoelectric Point: 7.7669

>NTDB_id=873984 WJ438_RS18195 WP_406726191.1 3901733..3903142(+) (radA) [Streptomyces sp. GD-15H]
MAARTKTTKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGVSAVRTTAPGRVTAPALPIGQVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKAASDQHRTLYVTGEESASQVRLRADRIHAIDDHLYLAAETDLSAVL
GHLDTVKPSLLILDSVQTVASPELDGAPGGMAQVREVAGALIRASKERGMSTILVGHVTKDGSIAGPRLLEHLVDVVLHF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAHRLGFTHALVPGDPGRIPAGMKVLEVADIGDALRVLPRSRHREAPRDEEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=873984 WJ438_RS18195 WP_406726191.1 3901733..3903142(+) (radA) [Streptomyces sp. GD-15H]
ATGGCTGCCCGTACCAAGACCACCAAGGACCGCCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCCTGGGGGACGGTCGAGGAGTACGGCGTGTCCGCGGTCCGTACGACGGCCCCGGGGC
GGGTCACCGCGCCCGCCCTGCCCATCGGCCAGGTCGACGGTCGCCAGGCCACGGCCCGTTCCACCGGCGTGCCCGAGCTG
GACCGGGTGCTCGGCGGCGGCCTGGTCCCGGGCGCCGTGGTGCTCGTCGCGGGCGAGCCGGGCGTCGGCAAGTCCACGCT
CCTCCTGGACGTCGCGGCCAAGGCGGCGAGCGATCAGCACCGCACCCTCTACGTCACCGGCGAGGAGTCGGCGAGCCAGG
TCCGGCTGCGGGCCGACCGGATCCACGCCATCGACGACCACCTCTACCTCGCCGCCGAGACGGACCTGTCCGCCGTGCTC
GGCCACCTGGACACGGTGAAGCCGTCCCTGCTGATCCTCGACTCGGTGCAGACGGTCGCCTCCCCGGAGCTCGACGGGGC
GCCGGGCGGCATGGCCCAGGTCCGCGAGGTGGCCGGCGCGCTGATCCGGGCCTCCAAGGAGCGCGGGATGTCGACGATCC
TGGTGGGCCACGTCACCAAGGACGGCTCGATCGCCGGCCCGCGGCTGCTGGAGCACCTGGTGGACGTCGTCCTGCACTTC
GAGGGCGACCGGCACGCCCGCCTGCGCCTGGTCCGCGGGGTGAAGAACCGCTACGGCACCACCGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACCGGCCTGGCCGACCCCAGCGGGCTGTTCCTCACCCGCCGTGCGGAGCCGGTCCCGG
GCACCTGCCTGACCGTGACCCTGGAGGGCCGCCGTCCCCTGGTCGCCGAGGTGCAGGCGCTCACCGTCGACTCGCAGATC
CCCTCCCCCCGCCGCACCACCTCGGGCCTGGAGACCTCCCGCGTCTCGATGATGCTCGCCGTCCTCGAGCAGCGCGGCCG
CATCAGTGCCCTGGGCAAGCGCGACATCTACTCCGCCACGGTCGGCGGCGTGAAGCTCTCCGAGCCGGCCGCGGACCTGG
CCGTCGCGCTCGCCCTGGCGTCGGCGGCGAGCGATACCCCGCTGCCCAAGAACCTGGTGGCGATCGGCGAGGTCGGCCTC
GCGGGCGAGGTGAGGCGGGTCACCGGCGTGCAGCGCAGACTCTCCGAGGCACACCGTCTGGGCTTCACGCACGCGCTCGT
GCCGGGCGATCCGGGCAGGATTCCGGCGGGAATGAAGGTTCTGGAAGTCGCGGACATAGGGGACGCCCTGCGCGTCCTTC
CGCGCTCCCGTCACCGAGAGGCCCCACGGGACGAGGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(369-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

43.046

96.588

0.416
  radA Streptococcus mitis NCTC 12261

43.046

96.588

0.416
  radA Streptococcus pneumoniae R6

43.111

95.949

0.414
  radA Streptococcus pneumoniae Rx1

43.111

95.949

0.414
  radA Streptococcus pneumoniae TIGR4

43.111

95.949

0.414
  radA Streptococcus pneumoniae D39

43.111

95.949

0.414
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.163

96.588

0.407