Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   LLI816_RS04225 Genome accession   NZ_CP149095
Coordinates   821701..822696 (+) Length   331 a.a.
NCBI ID   WP_371400349.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain I8-16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 816701..827696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLI816_RS04205 (LLI816_04210) rpsA 817660..818886 (+) 1227 WP_063283528.1 30S ribosomal protein S1 -
  LLI816_RS04210 (LLI816_04215) - 819037..819753 (+) 717 WP_003132595.1 nucleoside phosphorylase -
  LLI816_RS04215 (LLI816_04220) pnuC 819882..820595 (+) 714 WP_003132596.1 nicotinamide riboside transporter PnuC -
  LLI816_RS04220 uvrC 820690..821652 (+) 963 Protein_801 excinuclease ABC subunit UvrC -
  LLI816_RS04225 uvrC 821701..822696 (+) 996 WP_371400349.1 hypothetical protein Machinery gene
  LLI816_RS04230 (LLI816_04230) mutY 822860..824023 (+) 1164 WP_003132598.1 A/G-specific adenine glycosylase -
  LLI816_RS04235 (LLI816_04235) pepV 824089..825507 (+) 1419 WP_003132599.1 dipeptidase PepV -
  LLI816_RS04240 (LLI816_04240) acpS 825610..825969 (+) 360 WP_003132600.1 holo-ACP synthase -
  LLI816_RS04245 (LLI816_04245) alr 826014..827117 (+) 1104 WP_003132601.1 alanine racemase -

Sequence

Protein


Download         Length: 331 a.a.        Molecular weight: 36971.73 Da        Isoelectric Point: 10.1706

>NTDB_id=873750 LLI816_RS04225 WP_371400349.1 821701..822696(+) (uvrC) [Lactococcus lactis subsp. lactis strain I8-16]
MDAKVFTAKTLKFSDQKDVEQSIVKLDKELSAEKRLSSLLAKTQIVQPSRGEKKQLVNMATKNAQSQLQLKFDVAERDIL
KTTKAVENLGKILGIPKPVRIESFDNSNIMGTSPVSAMVVFIDGKPSKKDYRKYKIKTVVGADDYASMREVMTRRYSRAL
KEETALPDLIAMDGGAGQVNIAKQVLKELGLSIPVAGMQKNDKHQTSELLFGDPLDVVPLSRQSQEFFLLTRIQDEVHRF
AITFHRQLRGKNTFSSKLDGIVGLGPKRKQKLLTTFKNLKAIEEASVQEVAEAGIPYEVAERVKTTLSGPIQENENWESL
KDNVPLLEGKK

Nucleotide


Download         Length: 996 bp        

>NTDB_id=873750 LLI816_RS04225 WP_371400349.1 821701..822696(+) (uvrC) [Lactococcus lactis subsp. lactis strain I8-16]
GTGGATGCAAAAGTTTTTACGGCCAAGACGCTTAAATTTTCTGATCAAAAAGATGTTGAGCAATCAATTGTTAAACTTGA
TAAAGAATTATCAGCCGAAAAACGTTTATCATCACTTTTAGCTAAAACACAGATTGTTCAACCAAGCCGTGGTGAGAAAA
AACAATTGGTTAATATGGCAACTAAGAATGCTCAAAGTCAATTACAATTGAAATTTGATGTGGCTGAGCGTGATATTTTG
AAAACGACTAAAGCGGTTGAAAACTTGGGTAAAATTTTGGGAATACCAAAACCTGTAAGAATTGAATCTTTTGATAATTC
AAATATTATGGGGACTTCACCAGTATCTGCAATGGTTGTTTTTATTGATGGAAAACCTTCAAAAAAAGATTATCGGAAAT
ATAAAATTAAAACAGTGGTTGGTGCGGATGACTATGCTTCAATGCGCGAGGTGATGACGAGACGTTATTCGCGAGCTTTA
AAAGAAGAAACGGCTCTTCCTGATTTGATTGCAATGGATGGTGGAGCTGGTCAAGTTAACATTGCCAAGCAAGTTTTAAA
AGAGCTTGGGCTATCGATTCCGGTTGCTGGGATGCAAAAAAATGATAAGCACCAAACGTCAGAATTACTTTTTGGTGATC
CTTTAGACGTGGTTCCCTTGTCAAGACAATCTCAAGAATTCTTTTTGCTGACCAGAATTCAAGATGAGGTTCACCGTTTT
GCGATTACATTCCATAGACAACTACGTGGTAAAAATACATTTTCAAGTAAATTGGACGGTATTGTTGGACTTGGTCCAAA
ACGAAAACAAAAGTTACTGACAACTTTCAAAAATTTGAAAGCAATTGAAGAGGCAAGTGTACAAGAAGTGGCAGAAGCTG
GCATTCCTTATGAAGTAGCAGAACGTGTGAAAACAACTTTGTCTGGACCAATTCAAGAAAATGAAAATTGGGAATCACTC
AAGGATAATGTTCCTCTTTTAGAAGGTAAAAAATAA

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(92-242)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae R6

70.741

81.571

0.577
  uvrC Streptococcus pneumoniae D39

70.741

81.571

0.577
  uvrC Streptococcus pneumoniae TIGR4

70.741

81.571

0.577