Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   RCI28_RS19710 Genome accession   NZ_CP133362
Coordinates   3844946..3845725 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus thuringiensis serovar tenebrionis strain BI 256-82     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3839946..3850725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCI28_RS19685 (RCI28_19625) uppS 3840694..3841470 (-) 777 WP_000971296.1 isoprenyl transferase -
  RCI28_RS19690 (RCI28_19630) frr 3841556..3842113 (-) 558 WP_000531505.1 ribosome recycling factor -
  RCI28_RS19695 (RCI28_19635) pyrH 3842116..3842838 (-) 723 WP_000042669.1 UMP kinase -
  RCI28_RS19700 (RCI28_19640) tsf 3842905..3843792 (-) 888 WP_001018576.1 translation elongation factor Ts -
  RCI28_RS19705 (RCI28_19645) rpsB 3843896..3844597 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  RCI28_RS19710 (RCI28_19650) codY 3844946..3845725 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  RCI28_RS19715 (RCI28_19655) hslU 3845803..3847194 (-) 1392 WP_000550084.1 ATP-dependent protease ATPase subunit HslU -
  RCI28_RS19720 (RCI28_19660) hslV 3847217..3847759 (-) 543 WP_000526274.1 ATP-dependent protease proteolytic subunit HslV -
  RCI28_RS19725 (RCI28_19665) xerC 3847802..3848701 (-) 900 WP_001101244.1 tyrosine recombinase XerC -
  RCI28_RS19730 (RCI28_19670) trmFO 3848767..3850071 (-) 1305 WP_000213006.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=873609 RCI28_RS19710 WP_000421290.1 3844946..3845725(-) (codY) [Bacillus thuringiensis serovar tenebrionis strain BI 256-82]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=873609 RCI28_RS19710 WP_000421290.1 3844946..3845725(-) (codY) [Bacillus thuringiensis serovar tenebrionis strain BI 256-82]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTGGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGTGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTAGGTCAAG
AGTTCTTAGATGACGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCACATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GCTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459