Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   RCF60_RS16780 Genome accession   NZ_CP133320
Coordinates   3395157..3396320 (-) Length   387 a.a.
NCBI ID   WP_007407484.1    Uniprot ID   A3KLC1
Organism   Bacillus velezensis strain 1X1Y     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3390157..3401320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCF60_RS16750 (RCF60_16745) - 3390421..3390840 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  RCF60_RS16755 (RCF60_16750) comFC 3390914..3391603 (-) 690 WP_196770545.1 phosphoribosyltransferase family protein Machinery gene
  RCF60_RS16760 (RCF60_16755) - 3391609..3391893 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  RCF60_RS16765 (RCF60_16760) comFA 3391951..3393336 (-) 1386 WP_032876163.1 DEAD/DEAH box helicase Machinery gene
  RCF60_RS16770 (RCF60_16765) - 3393445..3394293 (-) 849 WP_032876160.1 DegV family protein -
  RCF60_RS16775 (RCF60_16770) degU 3394391..3395080 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  RCF60_RS16780 (RCF60_16775) degS 3395157..3396320 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  RCF60_RS16785 (RCF60_16780) - 3396543..3397190 (+) 648 WP_007614107.1 YigZ family protein -
  RCF60_RS16790 (RCF60_16785) - 3397195..3398376 (+) 1182 WP_032876157.1 LCP family protein -
  RCF60_RS16795 (RCF60_16790) - 3398475..3399551 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  RCF60_RS16800 (RCF60_16795) tuaH 3399684..3400880 (-) 1197 WP_032876154.1 teichuronic acid biosynthesis protein TuaH -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 45014.78 Da        Isoelectric Point: 6.8616

>NTDB_id=873459 RCF60_RS16780 WP_007407484.1 3395157..3396320(-) (degS) [Bacillus velezensis strain 1X1Y]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENQRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKDAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLGL

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=873459 RCF60_RS16780 WP_007407484.1 3395157..3396320(-) (degS) [Bacillus velezensis strain 1X1Y]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTTGAAGAACTCAAACAGATCAAACAGCAGG
TGTACGAAGTCATTGAGCTGGGCGACAAACTTGAAGTTCATACGCGGCACGCACGAAACCGCTTGTCTGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAGCAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATTATTGAAC
GGTCAGAATCATTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTTCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATCATTGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCCGCGCAAATGCTGGCAAATGTCATGATGAGATCGGAATTAATTGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGATTTCAGGAAATCAGAAATCTACGGCAGAATGTGCGGAATGCCCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGCATCGGAGACACAGAGAACCAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTCAAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTA
ACCGCTGATTTTGTCGTTCTCATCATTAAGGACAATGGAAAAGGCTTTGATATTAAGGATGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTG
GGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

95.584

99.483

0.951