Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   WHU70_RS20760 Genome accession   NZ_CP148746
Coordinates   4221548..4222024 (+) Length   158 a.a.
NCBI ID   WP_141437526.1    Uniprot ID   -
Organism   Escherichia coli strain Z1322HEC0010     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4216548..4227024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHU70_RS20735 (WHU70_20735) - 4216695..4219211 (+) 2517 WP_021578785.1 hypothetical protein -
  WHU70_RS20740 (WHU70_20740) - 4219287..4219741 (+) 455 Protein_4034 IrmA family protein -
  WHU70_RS20745 (WHU70_20745) - 4219820..4220053 (+) 234 WP_001119724.1 DUF905 family protein -
  WHU70_RS20750 (WHU70_20750) - 4220153..4220971 (+) 819 WP_406861634.1 DUF932 domain-containing protein -
  WHU70_RS20755 (WHU70_20755) - 4221053..4221532 (+) 480 WP_406861636.1 antirestriction protein -
  WHU70_RS20760 (WHU70_20760) radC 4221548..4222024 (+) 477 WP_141437526.1 DNA repair protein RadC Machinery gene
  WHU70_RS20765 (WHU70_20765) yeeT 4222087..4222308 (+) 222 WP_039264365.1 DUF987 domain-containing protein -
  WHU70_RS20770 (WHU70_20770) cbeA 4222388..4222757 (+) 370 Protein_4040 type IV toxin-antitoxin system YeeU family antitoxin -
  WHU70_RS20775 (WHU70_20775) cbtA 4222846..4223220 (+) 375 WP_001510972.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  WHU70_RS20780 (WHU70_20780) yeeW 4223217..4223411 (+) 195 WP_000988600.1 DUF5983 family protein -
  WHU70_RS20785 (WHU70_20785) - 4223424..4223537 (+) 114 WP_032154230.1 DUF957 domain-containing protein -
  WHU70_RS20790 (WHU70_20790) - 4223826..4223954 (-) 129 Protein_4044 transposase domain-containing protein -
  WHU70_RS20795 (WHU70_20795) - 4223954..4224208 (+) 255 Protein_4045 EutP/PduV family microcompartment system protein -
  WHU70_RS20800 (WHU70_20800) tmaR 4224309..4224638 (-) 330 WP_000450409.1 DUF496 family protein -
  WHU70_RS20805 (WHU70_20805) - 4224810..4225325 (-) 516 Protein_4047 hypothetical protein -
  WHU70_RS20810 (WHU70_20810) - 4225423..4226403 (-) 981 WP_000399648.1 IS110-like element IS621 family transposase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17790.47 Da        Isoelectric Point: 7.6152

>NTDB_id=873457 WHU70_RS20760 WP_141437526.1 4221548..4222024(+) (radC) [Escherichia coli strain Z1322HEC0010]
MQQLSFLPGEMTTRERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=873457 WHU70_RS20760 WP_141437526.1 4221548..4222024(+) (radC) [Escherichia coli strain Z1322HEC0010]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCACA
TAATCACCCGTCCGGTGAAGTTACACCCAGTAAGGCAGACCGGCTTATCACTGAGCGTCTGGTACAGGCACTGGCTCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

58.654

65.823

0.386