Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   RB216_RS27450 Genome accession   NZ_CP133298
Coordinates   5887292..5887699 (-) Length   135 a.a.
NCBI ID   WP_010564379.1    Uniprot ID   A0A7Y8D5M8
Organism   Pseudomonas canadensis strain GZH03     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5882292..5892699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RB216_RS27435 - 5884295..5886346 (-) 2052 WP_028618295.1 methyl-accepting chemotaxis protein -
  RB216_RS27440 - 5886343..5886867 (-) 525 WP_028618296.1 chemotaxis protein CheW -
  RB216_RS27445 pilH 5886880..5887245 (-) 366 WP_014720320.1 twitching motility response regulator PilH -
  RB216_RS27450 pilG 5887292..5887699 (-) 408 WP_010564379.1 twitching motility response regulator PilG Regulator
  RB216_RS27455 gshB 5887939..5888892 (+) 954 WP_028618297.1 glutathione synthase -
  RB216_RS27460 - 5888970..5889875 (+) 906 WP_028618298.1 energy transducer TonB -
  RB216_RS27465 - 5889943..5890512 (+) 570 WP_028618299.1 YqgE/AlgH family protein -
  RB216_RS27470 ruvX 5890512..5890949 (+) 438 WP_003195067.1 Holliday junction resolvase RuvX -
  RB216_RS27475 pyrR 5891125..5891631 (+) 507 WP_308908096.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  RB216_RS27480 - 5891656..5892660 (+) 1005 WP_016976042.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14906.40 Da        Isoelectric Point: 7.3842

>NTDB_id=873377 RB216_RS27450 WP_010564379.1 5887292..5887699(-) (pilG) [Pseudomonas canadensis strain GZH03]
MEQHSNALRVMVIDDSKTIRRTAETLLKNVGCDVITAIDGFDALARIVDHHPHIIFVDIMMPRLDGYQTCALVKNNPAFK
SIPVIMLSSKDGLFDKAKGRIVGVDQFLTKPFSKEELLGAIKAYVPGFAAVEQAH

Nucleotide


Download         Length: 408 bp        

>NTDB_id=873377 RB216_RS27450 WP_010564379.1 5887292..5887699(-) (pilG) [Pseudomonas canadensis strain GZH03]
ATGGAACAGCATTCCAACGCCTTGAGAGTGATGGTGATCGATGATTCGAAGACGATCCGCCGCACCGCTGAAACCTTGTT
GAAGAACGTAGGGTGCGATGTCATCACGGCCATCGACGGTTTCGATGCCCTGGCCCGGATTGTTGATCATCACCCGCATA
TTATTTTTGTCGACATCATGATGCCGCGCCTGGATGGCTATCAGACCTGCGCGCTGGTGAAGAACAACCCGGCGTTCAAG
TCGATCCCGGTGATCATGCTGTCGTCCAAGGACGGCCTGTTCGACAAGGCCAAGGGGCGCATCGTCGGTGTCGATCAGTT
TTTGACCAAGCCTTTCAGCAAGGAAGAACTGCTGGGCGCGATCAAGGCCTACGTGCCGGGGTTCGCCGCAGTAGAACAAG
CACACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y8D5M8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

70.4

92.593

0.652
  vicR Streptococcus mutans UA159

38.889

93.333

0.363