Detailed information NTG0873360

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RB216_RS03885
• Genome accession: NZ_CP133298
• Coordinates: 860903..861769 (-)
• Length: 288 a.a.
• NCBI ID: WP_308908338.1
• Uniprot ID: -
• Organism: Pseudomonas canadensis strain GZH03
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 855903..866769

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RB216_RS03850	-	856799..858097 (-)	1299	WP_028618790.1	NAD(P)/FAD-dependent oxidoreductase	-
RB216_RS03855	-	858158..858331 (-)	174	WP_016976295.1	DUF3094 family protein	-
RB216_RS03860	-	858386..859015 (-)	630	WP_010213242.1	DUF1780 domain-containing protein	-
RB216_RS03865	-	859119..859808 (+)	690	WP_028618791.1	energy-coupling factor ABC transporter permease	-
RB216_RS03870	-	859874..860089 (+)	216	WP_003171680.1	hypothetical protein	-
RB216_RS03875	yacG	860086..860286 (-)	201	WP_028618792.1	DNA gyrase inhibitor YacG	-
RB216_RS03880	coaE	860283..860906 (-)	624	WP_028618793.1	dephospho-CoA kinase	-
RB216_RS03885	pilD	860903..861769 (-)	867	WP_308908338.1	A24 family peptidase	Machinery gene
RB216_RS03890	pilC	861766..862974 (-)	1209	WP_308908339.1	type II secretion system F family protein	Machinery gene
RB216_RS03895	-	863177..863590 (+)	414	WP_068936050.1	pilin	-
RB216_RS03900	-	863626..865026 (+)	1401	WP_308908340.1	O-antigen ligase family protein	-
RB216_RS03910	-	865293..865598 (+)	306	WP_308908341.1	DUF6388 family protein	-
RB216_RS03915	nadC	865749..866597 (-)	849	WP_028618799.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31613.72 Da
• Isoelectric Point: 8.0054

>NTDB_id=873360 RB216_RS03885 WP_308908338.1 860903..861769(-) (pilD) [Pseudomonas canadensis strain GZH03]
MSLLLVAHPWAFVVMAGVLGLIVGSFLNVLALRLPKMLEREWRAQAHEVLGLPADPAGPTYNLMHPNSCCPHCNHPIRPW
ENIPLLSYLFLRGRCAHCQGAISARYPLTELACGLISAWVAWHFGFGWQAGAVLVLSWGLLAMSLIDADHQLLPDVLVMP
LLWLGLIVNGFGLLTTLPDALWGAVFGYMSLWSVFWLFKLATGKDGMGHGDFKLLALLGAWGGWQILPMTLLMSSLVGVF
VGLILMRLRKAQASAPMPFGPYLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=873360 RB216_RS03885 WP_308908338.1 860903..861769(-) (pilD) [Pseudomonas canadensis strain GZH03]
TTGAGCCTGTTACTGGTTGCGCATCCGTGGGCTTTTGTCGTGATGGCGGGTGTACTGGGGCTGATCGTCGGCAGTTTCCT
TAACGTGCTGGCATTGCGCCTGCCAAAAATGCTCGAACGGGAATGGCGCGCCCAGGCCCATGAAGTGCTCGGTCTACCCG
CCGATCCCGCTGGGCCGACCTACAACCTGATGCACCCCAATTCCTGCTGCCCGCACTGCAACCATCCGATACGGCCGTGG
GAAAATATCCCACTGCTCAGCTACCTGTTCCTGCGAGGTCGCTGTGCCCATTGCCAAGGTGCCATCAGCGCCCGCTATCC
GCTTACTGAACTGGCGTGTGGACTGATCTCGGCCTGGGTCGCCTGGCATTTCGGCTTTGGCTGGCAAGCGGGCGCAGTGC
TGGTGCTGAGCTGGGGTTTGTTGGCGATGAGCCTGATCGATGCCGACCATCAACTGTTGCCGGATGTGCTGGTGATGCCA
CTGCTGTGGCTGGGGCTGATCGTCAACGGGTTCGGCCTGCTGACGACATTGCCCGACGCCCTGTGGGGCGCGGTGTTCGG
GTACATGAGCCTGTGGAGCGTGTTCTGGCTGTTCAAGCTGGCTACCGGCAAGGACGGTATGGGCCACGGCGACTTCAAGT
TACTCGCACTGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGATGACGCTGTTGATGTCGTCGTTGGTCGGCGTGTTC
GTCGGCTTGATCCTGATGCGCCTGCGCAAGGCCCAGGCGTCGGCACCAATGCCGTTTGGTCCGTATCTGGCAATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (134-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.417	98.264	0.535
pilD	Vibrio campbellii strain DS40M4	51.071	97.222	0.497
pilD	Neisseria gonorrhoeae MS11	51.852	93.75	0.486
pilD	Acinetobacter baumannii D1279779	47.81	95.139	0.455
pilD	Acinetobacter nosocomialis M2	47.81	95.139	0.455