Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   RCG25_RS19850 Genome accession   NZ_CP133269
Coordinates   3957191..3958138 (-) Length   315 a.a.
NCBI ID   WP_308080549.1    Uniprot ID   -
Organism   Neobacillus sp. PS2-9     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3952191..3963138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG25_RS19830 (RCG25_19830) fabF 3954223..3955461 (-) 1239 WP_308080544.1 beta-ketoacyl-ACP synthase II -
  RCG25_RS19835 (RCG25_19835) - 3955570..3956502 (-) 933 WP_308080545.1 beta-ketoacyl-ACP synthase III -
  RCG25_RS19840 (RCG25_19840) - 3956680..3956937 (+) 258 WP_308080547.1 hypothetical protein -
  RCG25_RS19845 (RCG25_19845) comZ 3956970..3957170 (-) 201 WP_308080548.1 ComZ family protein Regulator
  RCG25_RS19850 (RCG25_19850) med 3957191..3958138 (-) 948 WP_308080549.1 BMP family ABC transporter substrate-binding protein Regulator
  RCG25_RS19855 (RCG25_19855) - 3958285..3959121 (-) 837 WP_308080550.1 hypothetical protein -
  RCG25_RS19860 (RCG25_19860) - 3959201..3959923 (-) 723 WP_308080551.1 hydrolase -
  RCG25_RS19865 (RCG25_19865) - 3960094..3960276 (+) 183 WP_308080552.1 YjzD family protein -
  RCG25_RS19870 (RCG25_19870) clpB 3960353..3962959 (-) 2607 WP_308080553.1 ATP-dependent chaperone ClpB -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 35251.20 Da        Isoelectric Point: 6.5037

>NTDB_id=873157 RCG25_RS19850 WP_308080549.1 3957191..3958138(-) (med) [Neobacillus sp. PS2-9]
MLKRFGIILLCLLLLGACGETKSTGKLKKVGLLVPETVNDQVWGTKGFKGMLKIQSKFNVDVFYKEGMNSEAVVKRAVEE
FDQKGVNLIFGHGAEYAEYFNKISKDYPKIHFVSFNGDAKNSNTTSLNFKAHAMGFFGGMVAAHMSKQHKVGVLAAYEWQ
PEIEGFYQGALAENNQTHVSIEYVGNWDDETKAIQLVDRMLENGVDVVYPAGDGYNVPVIERVKEQGLFVIGYVSDQSDL
GESTVLTSTIQQVDKLYEKVADQYNKGELKSGNLSFDFHDNVISLGKYSPLVKKEFIQQMNKHIEDYKETGKLPK

Nucleotide


Download         Length: 948 bp        

>NTDB_id=873157 RCG25_RS19850 WP_308080549.1 3957191..3958138(-) (med) [Neobacillus sp. PS2-9]
ATGCTAAAGCGTTTCGGAATCATTCTTTTATGTCTTCTTTTACTTGGAGCTTGTGGGGAAACAAAGTCTACAGGGAAATT
GAAAAAGGTAGGCTTGCTAGTTCCTGAGACGGTAAATGATCAAGTATGGGGAACAAAGGGATTTAAAGGAATGTTAAAAA
TACAATCAAAATTTAATGTTGATGTATTTTATAAAGAAGGAATGAATTCGGAAGCCGTGGTTAAACGCGCGGTCGAAGAG
TTTGACCAAAAAGGGGTTAACCTAATCTTTGGTCATGGAGCAGAATATGCTGAGTACTTTAATAAAATCTCTAAAGACTA
TCCGAAAATTCACTTTGTCAGCTTTAATGGGGATGCAAAGAATTCAAATACAACGAGTCTTAACTTTAAAGCGCATGCAA
TGGGCTTTTTTGGAGGGATGGTTGCTGCTCATATGTCAAAACAACATAAAGTAGGAGTGTTGGCTGCTTATGAGTGGCAA
CCAGAAATTGAAGGGTTTTACCAGGGAGCTCTAGCTGAAAATAATCAAACTCATGTGAGCATAGAATATGTCGGAAATTG
GGATGATGAAACTAAGGCAATCCAATTAGTTGATCGTATGTTGGAAAATGGAGTGGATGTGGTGTATCCTGCAGGCGATG
GTTATAACGTTCCGGTAATTGAACGAGTAAAGGAACAAGGCCTTTTTGTTATTGGCTACGTTTCAGACCAGTCAGACCTA
GGAGAATCTACCGTTTTAACAAGTACGATTCAACAGGTTGATAAATTATATGAAAAAGTGGCAGATCAATACAATAAAGG
CGAACTAAAATCAGGTAATCTTTCCTTTGACTTTCATGATAACGTCATCTCACTTGGAAAGTACAGCCCTTTAGTTAAGA
AAGAGTTCATTCAGCAAATGAACAAGCATATAGAGGATTACAAGGAAACAGGCAAATTGCCTAAATAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(28-314)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

54.921

100

0.549