Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   K6J86_RS16935 Genome accession   NZ_AP024627
Coordinates   3225027..3225671 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain BEST3136     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3220027..3230671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J86_RS16900 (BsBEST3136_32570) mrpB 3221219..3221650 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  K6J86_RS16905 (BsBEST3136_32580) mrpC 3221650..3221991 (+) 342 WP_014480700.1 Na(+)/H(+) antiporter subunit C -
  K6J86_RS16910 (BsBEST3136_32590) mrpD 3221984..3223465 (+) 1482 WP_033881486.1 Na+/H+ antiporter subunit D -
  K6J86_RS16915 (BsBEST3136_32600) mrpE 3223471..3223947 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  K6J86_RS16920 (BsBEST3136_32610) mrpF 3223947..3224231 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  K6J86_RS16925 (BsBEST3136_32620) mnhG 3224215..3224589 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  K6J86_RS16930 (BsBEST3136_32630) yuxO 3224628..3225008 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  K6J86_RS16935 (BsBEST3136_32640) comA 3225027..3225671 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  K6J86_RS16940 (BsBEST3136_32650) comP 3225752..3228064 (-) 2313 WP_014480703.1 sensor histidine kinase Regulator
  K6J86_RS16945 (BsBEST3136_32660) comX 3228080..3228301 (-) 222 WP_014480704.1 competence pheromone ComX -
  K6J86_RS16950 (BsBEST3136_32670) - 3228303..3229166 (-) 864 WP_014480705.1 polyprenyl synthetase family protein -
  K6J86_RS16955 (BsBEST3136_32680) degQ 3229351..3229491 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  K6J86_RS16960 - 3229713..3229838 (+) 126 WP_003228793.1 hypothetical protein -
  K6J86_RS16965 (BsBEST3136_32690) - 3229952..3230320 (+) 369 WP_014477834.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=87311 K6J86_RS16935 WP_003220716.1 3225027..3225671(-) (comA) [Bacillus subtilis strain BEST3136]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=87311 K6J86_RS16935 WP_003220716.1 3225027..3225671(-) (comA) [Bacillus subtilis strain BEST3136]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAATGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATAGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment