Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   RCG23_RS06270 Genome accession   NZ_CP133267
Coordinates   1243407..1244360 (-) Length   317 a.a.
NCBI ID   WP_308179018.1    Uniprot ID   A0AA51L6L3
Organism   Neobacillus sp. PS3-34     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1238407..1249360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG23_RS06245 (RCG23_06245) - 1239485..1240261 (-) 777 WP_308179013.1 DUF2268 domain-containing protein -
  RCG23_RS06250 (RCG23_06250) fabF 1240461..1241699 (-) 1239 WP_308179014.1 beta-ketoacyl-ACP synthase II -
  RCG23_RS06255 (RCG23_06255) - 1241792..1242724 (-) 933 WP_308179015.1 beta-ketoacyl-ACP synthase III -
  RCG23_RS06260 (RCG23_06260) - 1242917..1243162 (+) 246 WP_308179016.1 hypothetical protein -
  RCG23_RS06265 (RCG23_06265) comZ 1243191..1243391 (-) 201 WP_308179017.1 ComZ family protein Regulator
  RCG23_RS06270 (RCG23_06270) med 1243407..1244360 (-) 954 WP_308179018.1 BMP family ABC transporter substrate-binding protein Regulator
  RCG23_RS06275 (RCG23_06275) - 1244487..1245323 (-) 837 WP_308179019.1 hypothetical protein -
  RCG23_RS06280 (RCG23_06280) - 1245517..1246140 (-) 624 WP_308179020.1 hydrolase -
  RCG23_RS06285 (RCG23_06285) - 1246390..1246578 (+) 189 WP_308179021.1 YjzD family protein -
  RCG23_RS06290 (RCG23_06290) clpB 1246630..1249226 (-) 2597 Protein_1253 ATP-dependent chaperone ClpB -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35655.71 Da        Isoelectric Point: 6.2562

>NTDB_id=873048 RCG23_RS06270 WP_308179018.1 1243407..1244360(-) (med) [Neobacillus sp. PS3-34]
MWNRFAVIFLSLILLGACGQPVTAGKLKKVGLLVPETINDQVWGTKGYKGMLKIQSQFNIDVYYKEGMDTESVVKRAVKE
LDQKGVNLIFGHGAEFAQYFNDISKDYPKIHFVSFNGDAKNKNTTSLNFKGHAMGFFGGMTAAHMSKTHKIGVIAAYEWQ
PEVEGYYEGAMNENKDTKVSIQYVGNWDDQKKANELLENMLKEGIDVVYPAGDGFNVPVIEKMKEHGLYVIGYVSDQSDL
GESTVLTSTIQQVDKLYELIAKQYSEGILKSGNLSYDFKDDVITLGEFSPLVDKEFIKKMDREIKNYKKTGKLPNQE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=873048 RCG23_RS06270 WP_308179018.1 1243407..1244360(-) (med) [Neobacillus sp. PS3-34]
ATGTGGAACCGTTTCGCTGTGATATTTTTAAGCCTTATTTTGCTTGGGGCATGCGGACAACCAGTCACAGCGGGAAAATT
AAAAAAGGTTGGATTGCTCGTTCCTGAAACGATCAATGACCAGGTTTGGGGAACAAAGGGCTATAAAGGAATGCTGAAAA
TCCAATCCCAATTTAATATAGATGTCTACTATAAAGAAGGCATGGATACAGAATCAGTAGTGAAACGGGCGGTAAAGGAA
CTTGACCAGAAAGGTGTCAACCTAATTTTTGGCCATGGGGCAGAATTTGCTCAGTATTTTAATGATATTTCAAAAGACTA
TCCCAAAATCCACTTTGTAAGTTTTAATGGAGATGCAAAAAATAAGAACACGACAAGTCTGAATTTTAAGGGTCATGCGA
TGGGTTTTTTTGGGGGCATGACTGCGGCTCATATGTCTAAAACCCATAAAATAGGAGTCATTGCTGCCTATGAGTGGCAG
CCGGAAGTGGAAGGCTACTATGAGGGTGCCATGAATGAAAATAAGGACACAAAGGTTTCGATTCAATATGTCGGCAATTG
GGATGATCAAAAAAAGGCTAATGAGCTTCTGGAAAATATGCTTAAAGAAGGAATTGATGTTGTTTATCCAGCAGGTGATG
GATTTAATGTTCCTGTTATTGAAAAGATGAAAGAACATGGCCTATATGTCATCGGGTACGTTTCTGATCAGTCCGATCTT
GGTGAATCGACAGTTTTAACCAGCACGATACAGCAAGTAGACAAGCTGTATGAACTAATCGCAAAGCAATATTCAGAAGG
AATTTTAAAATCAGGCAATCTTTCCTATGATTTTAAAGATGACGTAATCACATTAGGGGAATTCAGTCCTTTGGTTGATA
AGGAATTTATCAAAAAAATGGATCGCGAAATTAAAAATTATAAAAAGACTGGAAAGCTTCCAAATCAAGAATAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(28-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

55.836

100

0.558