Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   RCG23_RS06265 Genome accession   NZ_CP133267
Coordinates   1243191..1243391 (-) Length   66 a.a.
NCBI ID   WP_308179017.1    Uniprot ID   -
Organism   Neobacillus sp. PS3-34     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 1238191..1248391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG23_RS06245 (RCG23_06245) - 1239485..1240261 (-) 777 WP_308179013.1 DUF2268 domain-containing protein -
  RCG23_RS06250 (RCG23_06250) fabF 1240461..1241699 (-) 1239 WP_308179014.1 beta-ketoacyl-ACP synthase II -
  RCG23_RS06255 (RCG23_06255) - 1241792..1242724 (-) 933 WP_308179015.1 beta-ketoacyl-ACP synthase III -
  RCG23_RS06260 (RCG23_06260) - 1242917..1243162 (+) 246 WP_308179016.1 hypothetical protein -
  RCG23_RS06265 (RCG23_06265) comZ 1243191..1243391 (-) 201 WP_308179017.1 ComZ family protein Regulator
  RCG23_RS06270 (RCG23_06270) med 1243407..1244360 (-) 954 WP_308179018.1 BMP family ABC transporter substrate-binding protein Regulator
  RCG23_RS06275 (RCG23_06275) - 1244487..1245323 (-) 837 WP_308179019.1 hypothetical protein -
  RCG23_RS06280 (RCG23_06280) - 1245517..1246140 (-) 624 WP_308179020.1 hydrolase -
  RCG23_RS06285 (RCG23_06285) - 1246390..1246578 (+) 189 WP_308179021.1 YjzD family protein -

Sequence

Protein


Download         Length: 66 a.a.        Molecular weight: 7675.91 Da        Isoelectric Point: 4.5125

>NTDB_id=873047 RCG23_RS06265 WP_308179017.1 1243191..1243391(-) (comZ) [Neobacillus sp. PS3-34]
MNVQEKNLQFMQIAMKHFPEAKAQLDQAGIELSMELIQPFMSLFTQVMAEAYELGKEDARKELKQE

Nucleotide


Download         Length: 201 bp        

>NTDB_id=873047 RCG23_RS06265 WP_308179017.1 1243191..1243391(-) (comZ) [Neobacillus sp. PS3-34]
ATGAATGTACAAGAAAAAAACCTGCAGTTCATGCAGATTGCAATGAAGCATTTTCCGGAGGCAAAAGCTCAATTGGACCA
AGCGGGCATTGAATTATCAATGGAACTGATTCAGCCGTTTATGTCTTTATTTACACAAGTAATGGCTGAGGCATACGAGT
TGGGAAAAGAGGATGCAAGAAAAGAGTTAAAGCAAGAGTAA

Domains

Predicted by InterproScan.

ComZ (ComZ)

(5-59)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

72.881

89.394

0.652