Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | RCG20_RS05120 | Genome accession | NZ_CP133266 |
| Coordinates | 1007956..1009038 (+) | Length | 360 a.a. |
| NCBI ID | WP_308183167.1 | Uniprot ID | - |
| Organism | Neobacillus sp. PS3-40 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1002956..1014038
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RCG20_RS05105 (RCG20_05105) | gcvT | 1003422..1004528 (-) | 1107 | WP_308183164.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| RCG20_RS05110 (RCG20_05110) | - | 1005059..1006729 (+) | 1671 | WP_308183165.1 | SNF2-related protein | - |
| RCG20_RS05115 (RCG20_05115) | - | 1006875..1007666 (+) | 792 | WP_308183166.1 | YqhG family protein | - |
| RCG20_RS05120 (RCG20_05120) | comGA | 1007956..1009038 (+) | 1083 | WP_308183167.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| RCG20_RS05125 (RCG20_05125) | comGB | 1009004..1010056 (+) | 1053 | WP_308183168.1 | competence type IV pilus assembly protein ComGB | - |
| RCG20_RS05130 (RCG20_05130) | comGC | 1010166..1010483 (+) | 318 | WP_308183169.1 | competence type IV pilus major pilin ComGC | - |
| RCG20_RS05135 (RCG20_05135) | comGD | 1010483..1010923 (+) | 441 | WP_308183170.1 | competence type IV pilus minor pilin ComGD | - |
| RCG20_RS05140 (RCG20_05140) | - | 1010907..1011245 (+) | 339 | WP_308183171.1 | hypothetical protein | - |
| RCG20_RS05145 (RCG20_05145) | comGF | 1011193..1011669 (+) | 477 | WP_308183172.1 | competence type IV pilus minor pilin ComGF | - |
| RCG20_RS05150 (RCG20_05150) | comGG | 1011666..1012052 (+) | 387 | WP_308183173.1 | competence type IV pilus minor pilin ComGG | - |
| RCG20_RS05155 (RCG20_05155) | - | 1012265..1012450 (+) | 186 | WP_308183174.1 | YqzE family protein | - |
| RCG20_RS05160 (RCG20_05160) | - | 1012709..1013410 (+) | 702 | WP_308183175.1 | helix-turn-helix domain-containing protein | - |
| RCG20_RS05165 (RCG20_05165) | - | 1013492..1013734 (+) | 243 | WP_308183176.1 | DUF2626 domain-containing protein | - |
Sequence
Protein
Download Length: 360 a.a. Molecular weight: 40362.78 Da Isoelectric Point: 8.0922
>NTDB_id=873000 RCG20_RS05120 WP_308183167.1 1007956..1009038(+) (comGA) [Neobacillus sp. PS3-40]
MFFIVSAIEILADRIISDAARNQATDIHIVPRKKDTLIQLRITNMLVPRLTLPKDECDRLISHFKFTANMDIGERRRPQS
GAIVSEVNGNLLSLRLSTLPSNNRESLVIRLLPQQEQIPFHQLSLFPAITRKLLALLKHAHGLIILTGPTGSGKSTTLYS
LLNETAHLFHRNIITLEDPIEKNYDSVLQVQVNEKAGVTYAAGLKAILRHDPDIIMVGEIRDAETAKIAVRAALTGHLVL
STMHTRDAKGAVFRLHEFGVDWLEVEQTLIAVTAQRLVELTCPYCLEHCSPHCYSIGNWKRASVFEILSGRNLSSIMKAA
KGEKVGTDYQLLKDVIRKGIALGYIKETEYERLVYDEETS
MFFIVSAIEILADRIISDAARNQATDIHIVPRKKDTLIQLRITNMLVPRLTLPKDECDRLISHFKFTANMDIGERRRPQS
GAIVSEVNGNLLSLRLSTLPSNNRESLVIRLLPQQEQIPFHQLSLFPAITRKLLALLKHAHGLIILTGPTGSGKSTTLYS
LLNETAHLFHRNIITLEDPIEKNYDSVLQVQVNEKAGVTYAAGLKAILRHDPDIIMVGEIRDAETAKIAVRAALTGHLVL
STMHTRDAKGAVFRLHEFGVDWLEVEQTLIAVTAQRLVELTCPYCLEHCSPHCYSIGNWKRASVFEILSGRNLSSIMKAA
KGEKVGTDYQLLKDVIRKGIALGYIKETEYERLVYDEETS
Nucleotide
Download Length: 1083 bp
>NTDB_id=873000 RCG20_RS05120 WP_308183167.1 1007956..1009038(+) (comGA) [Neobacillus sp. PS3-40]
GTGTTTTTTATTGTAAGTGCTATTGAAATATTAGCAGATCGAATTATTTCAGATGCAGCACGAAACCAAGCAACAGATAT
TCATATAGTTCCCAGGAAAAAGGACACACTTATCCAGCTCCGGATAACAAACATGTTAGTTCCTCGGCTAACTTTGCCAA
AAGACGAATGTGACAGATTGATCTCCCATTTTAAATTCACAGCAAATATGGATATCGGAGAAAGAAGGCGCCCCCAAAGT
GGTGCAATCGTTAGTGAAGTGAACGGAAATTTATTGAGCCTTAGGCTTTCTACTCTTCCATCTAACAATCGAGAAAGCCT
CGTGATCCGACTCTTACCACAACAAGAACAGATTCCTTTCCACCAGCTCTCACTATTCCCTGCAATAACCCGAAAATTAC
TTGCCCTCTTAAAACATGCCCATGGTTTAATCATACTAACAGGCCCAACCGGTAGCGGAAAATCGACTACTCTTTACTCT
CTTCTAAATGAAACAGCACACCTATTTCATCGCAATATCATTACTCTTGAAGATCCCATCGAAAAAAATTATGATTCTGT
CCTGCAGGTCCAAGTAAACGAAAAAGCAGGGGTTACCTATGCTGCCGGATTAAAAGCGATCCTTCGACACGATCCAGATA
TTATAATGGTTGGAGAAATAAGAGATGCTGAGACAGCTAAAATTGCTGTAAGAGCAGCACTTACTGGGCATTTAGTATTA
TCAACAATGCATACAAGAGATGCAAAGGGTGCAGTTTTTCGCCTTCACGAATTTGGGGTCGATTGGCTTGAGGTAGAACA
AACACTAATCGCCGTGACAGCACAACGATTAGTTGAACTTACATGCCCTTATTGCCTAGAACACTGTTCACCACACTGTT
ATTCAATCGGGAATTGGAAAAGAGCAAGCGTTTTCGAGATTTTATCAGGGAGAAACTTAAGTTCTATTATGAAAGCAGCA
AAAGGCGAAAAGGTAGGAACAGACTATCAGTTATTAAAAGACGTAATTCGGAAAGGAATTGCGCTCGGTTACATTAAAGA
GACTGAATATGAACGGCTTGTTTATGATGAAGAAACATCGTAG
GTGTTTTTTATTGTAAGTGCTATTGAAATATTAGCAGATCGAATTATTTCAGATGCAGCACGAAACCAAGCAACAGATAT
TCATATAGTTCCCAGGAAAAAGGACACACTTATCCAGCTCCGGATAACAAACATGTTAGTTCCTCGGCTAACTTTGCCAA
AAGACGAATGTGACAGATTGATCTCCCATTTTAAATTCACAGCAAATATGGATATCGGAGAAAGAAGGCGCCCCCAAAGT
GGTGCAATCGTTAGTGAAGTGAACGGAAATTTATTGAGCCTTAGGCTTTCTACTCTTCCATCTAACAATCGAGAAAGCCT
CGTGATCCGACTCTTACCACAACAAGAACAGATTCCTTTCCACCAGCTCTCACTATTCCCTGCAATAACCCGAAAATTAC
TTGCCCTCTTAAAACATGCCCATGGTTTAATCATACTAACAGGCCCAACCGGTAGCGGAAAATCGACTACTCTTTACTCT
CTTCTAAATGAAACAGCACACCTATTTCATCGCAATATCATTACTCTTGAAGATCCCATCGAAAAAAATTATGATTCTGT
CCTGCAGGTCCAAGTAAACGAAAAAGCAGGGGTTACCTATGCTGCCGGATTAAAAGCGATCCTTCGACACGATCCAGATA
TTATAATGGTTGGAGAAATAAGAGATGCTGAGACAGCTAAAATTGCTGTAAGAGCAGCACTTACTGGGCATTTAGTATTA
TCAACAATGCATACAAGAGATGCAAAGGGTGCAGTTTTTCGCCTTCACGAATTTGGGGTCGATTGGCTTGAGGTAGAACA
AACACTAATCGCCGTGACAGCACAACGATTAGTTGAACTTACATGCCCTTATTGCCTAGAACACTGTTCACCACACTGTT
ATTCAATCGGGAATTGGAAAAGAGCAAGCGTTTTCGAGATTTTATCAGGGAGAAACTTAAGTTCTATTATGAAAGCAGCA
AAAGGCGAAAAGGTAGGAACAGACTATCAGTTATTAAAAGACGTAATTCGGAAAGGAATTGCGCTCGGTTACATTAAAGA
GACTGAATATGAACGGCTTGTTTATGATGAAGAAACATCGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
55.775 |
98.611 |
0.55 |
| pilB | Glaesserella parasuis strain SC1401 |
40.115 |
96.944 |
0.389 |
| pilB | Haemophilus influenzae 86-028NP |
36.932 |
97.778 |
0.361 |