Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   RCG22_RS09470 Genome accession   NZ_CP133262
Coordinates   1962427..1963374 (-) Length   315 a.a.
NCBI ID   WP_308106635.1    Uniprot ID   -
Organism   Neobacillus sp. OS1-33     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1957427..1968374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG22_RS09445 (RCG22_09445) - 1957686..1958711 (-) 1026 WP_308106633.1 ABC transporter ATP-binding protein -
  RCG22_RS09450 (RCG22_09450) - 1958849..1959649 (-) 801 WP_308106634.1 DUF2268 domain-containing protein -
  RCG22_RS09455 (RCG22_09455) fabF 1959772..1961010 (-) 1239 WP_098260906.1 beta-ketoacyl-ACP synthase II -
  RCG22_RS09460 (RCG22_09460) - 1961094..1962025 (-) 932 Protein_1872 beta-ketoacyl-ACP synthase III -
  RCG22_RS09465 (RCG22_09465) comZ 1962214..1962405 (-) 192 WP_066252115.1 ComZ family protein Regulator
  RCG22_RS09470 (RCG22_09470) med 1962427..1963374 (-) 948 WP_308106635.1 BMP family ABC transporter substrate-binding protein Regulator
  RCG22_RS09475 (RCG22_09475) - 1963543..1964382 (-) 840 WP_308106636.1 hypothetical protein -
  RCG22_RS09480 (RCG22_09480) - 1964462..1965184 (-) 723 WP_308106637.1 hydrolase -
  RCG22_RS09485 (RCG22_09485) - 1965347..1965532 (+) 186 WP_098260900.1 YjzD family protein -
  RCG22_RS09490 (RCG22_09490) clpB 1965582..1968176 (-) 2595 WP_308106638.1 ATP-dependent chaperone ClpB -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 35091.89 Da        Isoelectric Point: 5.0690

>NTDB_id=872838 RCG22_RS09470 WP_308106635.1 1962427..1963374(-) (med) [Neobacillus sp. OS1-33]
MIYRFGMILLCLFLLGACGETKPAGKIKKVGLLVPETVNDQVWGTKGFNGLLKIQKNINVDVFYKEGMNSEAIARRAVEE
FDQKGVNLIFGHGSEYAEYFNDISSEYPNIHFISFNGDAKNKNTTSLNFKGHAMGFFGGMVAAHMSKTQNVGVIAAYEWQ
PEIEGFYQGAMAENKNTNVSIEYVGNWDDEIKAVQLANDMMDKGIDVIYPAGDGYNVPVIERVKERGLYVIGYVSDQSDL
GESTVLTSTVQQVDLLYEIVAGQYNKGLLKSGNLSYDFQDNVISLGKYSPNVNKEFIQKINKQIDIYKETGKLPK

Nucleotide


Download         Length: 948 bp        

>NTDB_id=872838 RCG22_RS09470 WP_308106635.1 1962427..1963374(-) (med) [Neobacillus sp. OS1-33]
ATGATATACCGTTTCGGAATGATACTTTTATGCCTCTTTTTACTTGGAGCCTGTGGAGAGACAAAACCTGCAGGTAAAAT
AAAAAAGGTTGGATTGTTAGTACCCGAAACGGTCAATGACCAGGTATGGGGGACAAAGGGATTTAATGGCTTGTTGAAAA
TTCAAAAGAATATTAATGTAGATGTGTTTTATAAAGAAGGTATGAATTCAGAAGCTATTGCCCGGCGTGCTGTTGAAGAA
TTTGACCAAAAAGGGGTAAATTTAATCTTTGGTCATGGATCTGAATATGCAGAGTATTTTAATGATATTTCATCTGAATA
TCCTAATATCCATTTTATAAGTTTTAATGGTGATGCTAAAAACAAGAATACAACAAGTCTGAATTTTAAAGGTCACGCGA
TGGGGTTTTTTGGTGGAATGGTCGCAGCACATATGTCAAAAACACAAAATGTAGGTGTTATAGCCGCATATGAATGGCAG
CCGGAGATTGAAGGCTTCTATCAAGGGGCAATGGCAGAAAATAAAAACACAAACGTTAGTATAGAATATGTTGGAAATTG
GGATGATGAAATAAAGGCAGTTCAATTAGCAAATGACATGATGGATAAGGGAATTGATGTCATCTACCCTGCCGGTGACG
GGTATAATGTACCAGTAATAGAAAGGGTGAAAGAACGGGGATTGTATGTTATAGGATACGTTTCTGATCAATCAGATTTA
GGTGAATCTACGGTACTTACAAGTACCGTACAACAGGTCGATCTATTATATGAAATAGTGGCAGGGCAATACAATAAAGG
GTTATTAAAATCAGGTAATCTTTCCTATGATTTTCAAGATAATGTTATTTCACTTGGTAAATATAGTCCCAATGTAAATA
AAGAATTTATTCAAAAGATAAATAAGCAAATTGACATCTATAAGGAAACAGGAAAATTGCCAAAATGA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-314)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

56.19

100

0.562