Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   RCF70_RS04290 Genome accession   NZ_CP133247
Coordinates   902507..903136 (+) Length   209 a.a.
NCBI ID   WP_037575783.1    Uniprot ID   A0AAE5SZX5
Organism   Staphylococcus chromogenes strain TA     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 897507..908136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCF70_RS04265 (RCF70_04230) - 898178..899188 (-) 1011 WP_107370073.1 FUSC family protein -
  RCF70_RS04270 (RCF70_04235) map 899520..900278 (+) 759 WP_107359301.1 type I methionyl aminopeptidase -
  RCF70_RS04275 (RCF70_04240) - 900374..900763 (+) 390 WP_107359302.1 hypothetical protein -
  RCF70_RS04280 (RCF70_04245) liaF 900776..901477 (+) 702 WP_037575779.1 cell wall-active antibiotics response protein LiaF -
  RCF70_RS04285 (RCF70_04250) vraS 901474..902517 (+) 1044 WP_037575781.1 sensor histidine kinase Regulator
  RCF70_RS04290 (RCF70_04255) vraR 902507..903136 (+) 630 WP_037575783.1 response regulator transcription factor Regulator
  RCF70_RS04295 (RCF70_04260) - 903343..903915 (-) 573 WP_107359303.1 beta-class carbonic anhydrase -
  RCF70_RS04300 (RCF70_04265) - 903958..905226 (-) 1269 WP_419791768.1 YihY/virulence factor BrkB family protein -
  RCF70_RS04305 (RCF70_04270) - 905353..905628 (-) 276 WP_037575789.1 YtxH domain-containing protein -
  RCF70_RS04310 (RCF70_04275) - 905633..906091 (-) 459 WP_107359305.1 low molecular weight protein-tyrosine-phosphatase -
  RCF70_RS04315 (RCF70_04280) - 906224..906433 (+) 210 WP_037575795.1 DUF1128 domain-containing protein -
  RCF70_RS04320 (RCF70_04285) - 906464..907693 (+) 1230 WP_241956086.1 aminopeptidase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23432.11 Da        Isoelectric Point: 5.1755

>NTDB_id=872779 RCF70_RS04290 WP_037575783.1 902507..903136(+) (vraR) [Staphylococcus chromogenes strain TA]
MTIKVLFVDDHEMVRIGISSYLSTQPDIEVVGEGASGKEAIEKAHALKPDLILMDLVMTDMDGVEATTQIKKDLPKIKVV
MLTSYIEDKEVYRALDAGVDSYILKTTSASDIAEAIRKTSKGESVFEAEVLVKMRNRMRQRAELYELLTEREMEILLLIS
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHGLIE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=872779 RCF70_RS04290 WP_037575783.1 902507..903136(+) (vraR) [Staphylococcus chromogenes strain TA]
ATGACAATTAAAGTTTTATTTGTAGATGACCACGAAATGGTAAGAATTGGTATCTCAAGTTATTTATCTACGCAGCCAGA
TATTGAAGTTGTTGGGGAAGGGGCTTCGGGTAAAGAAGCCATCGAAAAAGCGCATGCATTAAAACCTGATTTAATTTTAA
TGGATTTAGTGATGACGGATATGGACGGAGTAGAAGCGACGACACAAATTAAGAAAGATTTACCTAAAATCAAAGTCGTT
ATGCTTACAAGTTATATTGAGGATAAAGAAGTCTACCGTGCATTAGATGCAGGTGTAGACAGTTATATTTTAAAAACAAC
AAGCGCCAGCGACATTGCCGAAGCCATTCGCAAAACATCTAAAGGGGAATCTGTCTTTGAAGCAGAAGTACTCGTTAAAA
TGAGAAATCGTATGCGACAACGTGCAGAACTTTACGAGCTTTTAACCGAAAGAGAAATGGAAATTTTATTATTGATTTCA
AAAGGCTATTCTAATCAAGAAATTGCGAGCGCTTCACATATAACGATTAAAACCGTTAAAACACATGTTAGTAACATTTT
AAGTAAACTTGAAGTTCAAGACCGTACACAAGCTGTGATATATGCTTTCCAACATGGGCTCATAGAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(147-202)

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

90.909

100

0.909
  degU Bacillus subtilis subsp. subtilis str. 168

35.714

100

0.383