Detailed information    

insolico Bioinformatically predicted

Overview

Name   braS   Type   Regulator
Locus tag   RCF70_RS00875 Genome accession   NZ_CP133247
Coordinates   179396..180283 (+) Length   295 a.a.
NCBI ID   WP_241955804.1    Uniprot ID   -
Organism   Staphylococcus chromogenes strain TA     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 174396..185283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCF70_RS00845 (RCF70_00835) - 174738..175406 (+) 669 WP_107358224.1 response regulator transcription factor -
  RCF70_RS00850 (RCF70_00840) - 175489..176397 (+) 909 WP_107358225.1 ABC transporter ATP-binding protein -
  RCF70_RS00855 (RCF70_00845) - 176397..177146 (+) 750 WP_107358226.1 ABC transporter permease -
  RCF70_RS00860 (RCF70_00850) - 177170..178072 (+) 903 WP_107358227.1 sensor histidine kinase -
  RCF70_RS00865 (RCF70_00855) - 178132..178569 (-) 438 WP_338399909.1 VOC family protein -
  RCF70_RS00870 (RCF70_00860) braR 178699..179364 (+) 666 WP_107358228.1 response regulator transcription factor Regulator
  RCF70_RS00875 (RCF70_00865) braS 179396..180283 (+) 888 WP_241955804.1 sensor histidine kinase Regulator
  RCF70_RS00880 (RCF70_00870) - 180373..181122 (+) 750 WP_037576681.1 ABC transporter ATP-binding protein -
  RCF70_RS00885 (RCF70_00875) - 181124..183106 (+) 1983 WP_157947104.1 FtsX-like permease family protein -
  RCF70_RS00890 (RCF70_00880) - 183152..183778 (-) 627 WP_037576676.1 FMN-dependent NADH-azoreductase -
  RCF70_RS00895 (RCF70_00885) spn 184014..184334 (-) 321 WP_107358231.1 SPIN family peroxidase inhibitor -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 34393.63 Da        Isoelectric Point: 7.2757

>NTDB_id=872773 RCF70_RS00875 WP_241955804.1 179396..180283(+) (braS) [Staphylococcus chromogenes strain TA]
MKSELVIFVLIYLLFFSVFYIFELSKEAYAISCTIGLFVFAIYLVIRWIYFKKEETVKQMNERLRQDLREEKIAHRSYQK
DIENYFLTWIHQIKTPITASKLLLERNEAGAINQVRQEITEIENYTNLALNYLKLLNHETDMVAEKVSLDVIVKPLIQRY
ALHFIEHHTRIHTENLNQNVTTDAQWSRIMIEQLLNNALKYAKGGDIWVTFDNEQNALSVRDNGIGIQKSDLPKIFEKGY
SGMNGRLNEKSSGIGLFVVKQISNKLQHPIEVVSEPGHSTTFTIYFPHESNLSKM

Nucleotide


Download         Length: 888 bp        

>NTDB_id=872773 RCF70_RS00875 WP_241955804.1 179396..180283(+) (braS) [Staphylococcus chromogenes strain TA]
ATGAAAAGTGAGCTTGTAATATTTGTATTAATATATTTACTATTTTTCAGTGTTTTTTACATTTTCGAGTTATCTAAGGA
AGCCTATGCCATTTCATGTACGATTGGACTATTTGTATTTGCAATCTATTTAGTCATACGATGGATTTATTTTAAGAAAG
AAGAAACAGTTAAACAAATGAATGAGCGGTTAAGACAAGATTTAAGAGAAGAAAAAATAGCGCATCGTTCATATCAAAAA
GACATTGAAAATTACTTTTTAACATGGATTCATCAAATAAAAACACCGATAACAGCTTCTAAATTACTGCTAGAACGAAA
TGAAGCAGGAGCCATTAACCAGGTACGTCAAGAAATTACCGAAATTGAGAATTATACAAATTTAGCGCTCAACTATTTAA
AATTATTAAACCATGAAACAGATATGGTCGCTGAAAAAGTGTCCCTCGATGTGATCGTTAAACCATTAATACAGCGCTAT
GCCTTACATTTTATTGAGCATCATACTCGAATACATACTGAAAATTTGAATCAAAATGTGACGACGGACGCCCAATGGAG
CCGAATTATGATTGAACAATTGTTAAATAACGCTCTGAAATATGCAAAGGGTGGGGACATTTGGGTGACATTTGATAATG
AGCAAAATGCGCTTTCAGTGCGTGATAATGGTATTGGTATTCAGAAATCCGATTTGCCGAAAATATTTGAAAAGGGCTAT
TCCGGGATGAATGGACGTTTAAATGAAAAATCGAGCGGCATTGGTTTGTTTGTCGTGAAGCAAATTTCCAACAAGTTACA
ACATCCAATTGAAGTCGTTTCCGAGCCGGGACACTCTACCACCTTTACAATTTATTTTCCTCACGAATCCAATCTTTCAA
AAATGTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(188-289)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braS Staphylococcus aureus N315

50

96.949

0.485