Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   RCF70_RS00870 Genome accession   NZ_CP133247
Coordinates   178699..179364 (+) Length   221 a.a.
NCBI ID   WP_107358228.1    Uniprot ID   -
Organism   Staphylococcus chromogenes strain TA     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 173699..184364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCF70_RS00845 (RCF70_00835) - 174738..175406 (+) 669 WP_107358224.1 response regulator transcription factor -
  RCF70_RS00850 (RCF70_00840) - 175489..176397 (+) 909 WP_107358225.1 ABC transporter ATP-binding protein -
  RCF70_RS00855 (RCF70_00845) - 176397..177146 (+) 750 WP_107358226.1 ABC transporter permease -
  RCF70_RS00860 (RCF70_00850) - 177170..178072 (+) 903 WP_107358227.1 sensor histidine kinase -
  RCF70_RS00865 (RCF70_00855) - 178132..178569 (-) 438 WP_338399909.1 VOC family protein -
  RCF70_RS00870 (RCF70_00860) braR 178699..179364 (+) 666 WP_107358228.1 response regulator transcription factor Regulator
  RCF70_RS00875 (RCF70_00865) braS 179396..180283 (+) 888 WP_241955804.1 sensor histidine kinase Regulator
  RCF70_RS00880 (RCF70_00870) - 180373..181122 (+) 750 WP_037576681.1 ABC transporter ATP-binding protein -
  RCF70_RS00885 (RCF70_00875) - 181124..183106 (+) 1983 WP_157947104.1 FtsX-like permease family protein -
  RCF70_RS00890 (RCF70_00880) - 183152..183778 (-) 627 WP_037576676.1 FMN-dependent NADH-azoreductase -
  RCF70_RS00895 (RCF70_00885) spn 184014..184334 (-) 321 WP_107358231.1 SPIN family peroxidase inhibitor -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25920.09 Da        Isoelectric Point: 5.3464

>NTDB_id=872772 RCF70_RS00870 WP_107358228.1 178699..179364(+) (braR) [Staphylococcus chromogenes strain TA]
MKIMIVEDDFTIANSLVQELRKWNHEAINVQDYIHIKDRFLEMQPHLILLDINLPNFNGFHWCQEIRKVSNVPIIFISSA
SDNMNQMMAMQMGADDFIEKPFNLNLTIMKIQALLRRSYDFKVEQTELNVKGCQLITEKALLTYEDQTVSLTLTELQILQ
LLFLNEDQFVSRNALIEQCWQSENFIDDNTLAVNMSRLRKKLKQLGLTEFIQTKKNVGYKV

Nucleotide


Download         Length: 666 bp        

>NTDB_id=872772 RCF70_RS00870 WP_107358228.1 178699..179364(+) (braR) [Staphylococcus chromogenes strain TA]
ATGAAGATTATGATTGTTGAAGATGATTTCACGATTGCCAATAGTTTAGTGCAAGAATTACGCAAGTGGAATCATGAAGC
GATAAATGTTCAAGACTACATACATATCAAAGACCGTTTTTTAGAAATGCAGCCTCACTTAATTTTATTAGATATTAACC
TCCCGAATTTCAACGGTTTCCACTGGTGTCAGGAAATACGTAAAGTGTCAAACGTCCCTATTATTTTCATCAGTTCAGCC
TCTGATAATATGAACCAAATGATGGCCATGCAAATGGGAGCGGATGATTTTATTGAAAAACCATTCAATTTAAATTTAAC
CATTATGAAAATACAAGCGCTATTAAGAAGGTCTTACGATTTTAAAGTGGAACAAACGGAACTTAACGTCAAAGGATGTC
AGTTGATTACGGAAAAGGCATTACTCACGTATGAAGATCAAACCGTTTCACTTACTTTGACGGAACTTCAAATTTTACAA
TTGTTGTTTTTAAATGAAGATCAATTTGTCAGTCGTAATGCGCTGATAGAACAGTGTTGGCAATCTGAAAATTTTATAGA
TGACAATACATTGGCCGTCAATATGTCACGTTTACGCAAAAAATTAAAACAATTAGGATTAACAGAGTTTATTCAAACGA
AGAAAAATGTCGGATACAAAGTGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-106)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

68.326

100

0.683