Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   RCF70_RS00240 Genome accession   NZ_CP133247
Coordinates   49408..50757 (-) Length   449 a.a.
NCBI ID   WP_107393143.1    Uniprot ID   -
Organism   Staphylococcus chromogenes strain TA     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 44408..55757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCF70_RS00210 (RCF70_00210) - 44703..45578 (-) 876 WP_419791703.1 HTH domain-containing protein -
  RCF70_RS00215 (RCF70_00215) - 45786..46001 (-) 216 WP_031886433.1 hypothetical protein -
  RCF70_RS00220 (RCF70_00220) - 46020..46529 (-) 510 WP_037576892.1 DUF1643 domain-containing protein -
  RCF70_RS00225 (RCF70_00225) - 46542..46853 (-) 312 WP_105966009.1 DUF960 family protein -
  RCF70_RS00230 (RCF70_00230) - 46949..47287 (-) 339 WP_419791704.1 SAUGI family uracil-DNA glycosylase inhibitor -
  RCF70_RS00235 (RCF70_00235) ccrB 47759..49387 (-) 1629 WP_419791705.1 cassette chromosome recombinase CcrB Machinery gene
  RCF70_RS00240 (RCF70_00240) ccrA 49408..50757 (-) 1350 WP_107393143.1 cassette chromosome recombinase CcrA Machinery gene
  RCF70_RS00245 (RCF70_00245) - 50943..51218 (-) 276 WP_105966014.1 hypothetical protein -
  RCF70_RS00250 (RCF70_00250) cch1 51276..53054 (-) 1779 WP_107393142.1 cassette chromosome replicative helicase -
  RCF70_RS00255 (RCF70_00255) ssb 53054..53299 (-) 246 WP_107393141.1 cassette chromosome ssDNA-binding protein -
  RCF70_RS00260 (RCF70_00260) - 53437..54480 (+) 1044 WP_233655062.1 ACP synthase -
  RCF70_RS00265 (RCF70_00265) tnpA 54787..55199 (+) 413 Protein_50 IS200/IS605 family transposase -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52286.00 Da        Isoelectric Point: 9.9374

>NTDB_id=872771 RCF70_RS00240 WP_107393143.1 49408..50757(-) (ccrA) [Staphylococcus chromogenes strain TA]
MKQAIGYLRQSTIKQQSLSAQKQTIKALAEKYNIQHITFYSDKQSGRTDKRNGYQQVITLIQQGHCDILCCYRLNRLHRN
LKNALKLIRLCQKHQVHILSVCDGYFNLDSSFDRLKLNIFISLAELESDNISEQVKNGLREKARQGKLITTHAPFGYHYH
DGTFTINKDEAPTVKAIFDDYVEGYGYKKISQRLEKSNHLINRKPFQVRCIILNPNYCGRVLNQYGQYDNMFPPIVSVSL
YEYAQKVRNQRQVNRRSSDNQLKQKIKCPCCGSTLTNLTIRKKKHALRYYVCPRNMNASRFVCDFKGINAQMLETRVLTT
CKDFFQNQQLYSKINQTIQQQLKNQRTLETKHILTQEQLIEKLAQGTITADTFREKSLLLQQQSKTNSSISSTQIQRAFQ
NVIQQCFTLNMLYPYIDEIHITENKTLTGIYFKNEPLNIVNQDMQSSIA

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=872771 RCF70_RS00240 WP_107393143.1 49408..50757(-) (ccrA) [Staphylococcus chromogenes strain TA]
ATGAAACAAGCCATTGGTTACTTACGTCAAAGCACAATAAAACAACAATCACTCTCAGCCCAAAAACAAACCATCAAGGC
ATTAGCCGAAAAGTATAATATTCAACACATTACCTTTTATAGCGATAAGCAATCAGGTCGAACTGATAAACGCAATGGTT
ACCAACAAGTCATTACGCTAATTCAACAAGGTCACTGTGACATATTATGTTGCTACAGACTGAATCGATTACACCGAAAT
TTGAAAAATGCTTTGAAACTTATCAGATTATGTCAAAAGCATCAGGTTCATATCTTAAGTGTCTGTGATGGCTATTTCAA
CTTAGACTCATCTTTTGATCGTTTAAAACTTAACATTTTCATCAGCCTTGCAGAGTTAGAATCTGATAATATCAGTGAAC
AGGTCAAAAATGGACTACGCGAAAAAGCTCGCCAAGGTAAACTCATTACAACTCACGCCCCTTTTGGCTATCACTATCAC
GATGGGACATTTACTATAAATAAGGATGAAGCACCTACTGTAAAAGCCATATTCGACGACTACGTGGAAGGTTACGGATA
CAAGAAAATTTCTCAACGCTTAGAAAAATCCAATCACCTCATCAACCGAAAACCTTTCCAAGTGCGTTGTATTATCCTAA
ATCCTAATTACTGTGGCCGAGTGCTAAATCAATATGGCCAATACGATAATATGTTCCCCCCTATTGTTTCAGTCAGCTTG
TATGAATACGCTCAAAAAGTCAGAAACCAAAGACAAGTTAATCGTAGATCTTCAGACAACCAACTCAAACAAAAAATCAA
ATGCCCTTGTTGTGGTTCAACGCTCACCAATCTGACCATTAGGAAAAAGAAGCACGCATTGCGTTATTATGTTTGTCCAA
GAAATATGAATGCTTCACGTTTTGTCTGTGATTTCAAGGGCATCAATGCACAAATGCTAGAAACAAGGGTCTTAACAACT
TGTAAGGACTTTTTTCAAAATCAACAGCTCTATTCAAAAATTAATCAAACAATCCAACAACAACTAAAAAACCAAAGAAC
TTTGGAAACGAAACATATACTCACCCAAGAACAACTAATAGAAAAGCTCGCTCAAGGGACGATTACTGCAGATACATTCA
GAGAAAAATCTCTACTGTTACAACAACAATCAAAAACCAATTCATCCATTAGCTCGACTCAAATTCAAAGGGCTTTTCAA
AATGTCATTCAACAATGTTTCACGTTAAATATGTTATACCCCTATATTGATGAAATTCATATTACAGAAAACAAAACGCT
TACAGGAATCTATTTCAAAAATGAACCCTTAAACATCGTCAATCAAGATATGCAATCATCGATTGCTTAA

Domains

Predicted by InterproScan.

Recombinase (Recombinase)

(169-250)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-321)

Resolvase, N terminal domain (Resolvase)

(4-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

76.169

100

0.762
  ccrA Staphylococcus aureus N315

71.492

100

0.715