Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   RCF70_RS00235 Genome accession   NZ_CP133247
Coordinates   47759..49387 (-) Length   542 a.a.
NCBI ID   WP_419791705.1    Uniprot ID   -
Organism   Staphylococcus chromogenes strain TA     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 42759..54387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCF70_RS00195 (RCF70_00195) - 42887..43663 (-) 777 WP_419791701.1 bacteriochlorophyll 4-vinyl reductase -
  RCF70_RS00200 (RCF70_00200) - 43881..44183 (-) 303 WP_037576883.1 hypothetical protein -
  RCF70_RS00205 (RCF70_00205) - 44201..44338 (-) 138 WP_419791702.1 hypothetical protein -
  RCF70_RS00210 (RCF70_00210) - 44703..45578 (-) 876 WP_419791703.1 HTH domain-containing protein -
  RCF70_RS00215 (RCF70_00215) - 45786..46001 (-) 216 WP_031886433.1 hypothetical protein -
  RCF70_RS00220 (RCF70_00220) - 46020..46529 (-) 510 WP_037576892.1 DUF1643 domain-containing protein -
  RCF70_RS00225 (RCF70_00225) - 46542..46853 (-) 312 WP_105966009.1 DUF960 family protein -
  RCF70_RS00230 (RCF70_00230) - 46949..47287 (-) 339 WP_419791704.1 SAUGI family uracil-DNA glycosylase inhibitor -
  RCF70_RS00235 (RCF70_00235) ccrB 47759..49387 (-) 1629 WP_419791705.1 cassette chromosome recombinase CcrB Machinery gene
  RCF70_RS00240 (RCF70_00240) ccrA 49408..50757 (-) 1350 WP_107393143.1 cassette chromosome recombinase CcrA Machinery gene
  RCF70_RS00245 (RCF70_00245) - 50943..51218 (-) 276 WP_105966014.1 hypothetical protein -
  RCF70_RS00250 (RCF70_00250) cch1 51276..53054 (-) 1779 WP_107393142.1 cassette chromosome replicative helicase -
  RCF70_RS00255 (RCF70_00255) ssb 53054..53299 (-) 246 WP_107393141.1 cassette chromosome ssDNA-binding protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62843.89 Da        Isoelectric Point: 9.8549

>NTDB_id=872770 RCF70_RS00235 WP_419791705.1 47759..49387(-) (ccrB) [Staphylococcus chromogenes strain TA]
MQQLKQKRVGIYVRVSTEMQSTEGYSIDGQINQIREYCQFHHFEVTDIYADRGISGKSMNRPELQRMLKDANEGHIDCVM
VYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYEKIPDSKHELMINQHEANIVKYIFEAYAKGHGYRKIANALNHKGYVTKKGKPFSVGSITYILSNPFYIGQIQFAK
YKDWNEKRRKGLNDKPVIAQGKHSPIISQDLWDKVQMRKKQIKEKPQVHGKGTNLLTGIIRCPQCGAAMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRAEVIEKYVMDQILEIVKSDKVIKKVVERVNQENRVDVAALNHDTAYKQQQFD
EINTKLKNLVQTIEDNPDLTSALKPTIHQYETQLNDITNQMNQLKQQQNQEKPSYNTKQIAALLQRIFQNIESMDKSQLK
ALYLTVIDRIDIRKDENHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSFLFLPQTLYFQI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=872770 RCF70_RS00235 WP_419791705.1 47759..49387(-) (ccrB) [Staphylococcus chromogenes strain TA]
ATGCAACAACTCAAACAAAAACGTGTCGGTATCTATGTTCGTGTATCAACGGAAATGCAAAGTACAGAAGGTTATAGTAT
TGATGGCCAAATCAATCAGATTAGAGAATACTGTCAATTTCATCATTTTGAAGTCACAGATATTTACGCTGATCGTGGTA
TCTCAGGAAAATCTATGAACCGCCCTGAGCTCCAACGTATGTTGAAGGATGCGAATGAAGGTCATATCGATTGTGTCATG
GTGTATAAAACAAACCGACTTGCACGTAATACATCAGACTTACTCAAAATTGTCGAAGATTTGCATAAGCAAAATGTCGA
ATTTTTCAGTTTGTCTGAACGTATGGAAGTCAATACGAGTAGCGGTAAACTCATGTTACAAATACTTGCGAGTTTCTCAG
AATTTGAACGTAATAATATTGTCGAGAACGTTTTCATGGGCCAAACCCGACGTGCCCAAGAAGGCTATTATCAAGGCAAT
TTGCCGTTAGGTTATGAAAAAATACCCGATAGTAAACATGAACTGATGATTAATCAACATGAAGCCAATATTGTGAAATA
TATATTTGAAGCTTACGCTAAAGGTCATGGTTACCGTAAAATTGCTAATGCGTTGAATCATAAAGGTTATGTCACTAAAA
AAGGCAAGCCCTTTAGTGTGGGTTCTATAACCTATATCCTATCTAACCCCTTCTACATTGGACAAATTCAGTTTGCGAAA
TACAAAGACTGGAATGAAAAGCGTCGTAAGGGGCTAAACGATAAACCTGTCATCGCTCAGGGAAAGCATTCTCCTATTAT
AAGCCAAGATTTGTGGGACAAAGTCCAAATGCGTAAGAAACAAATCAAAGAAAAGCCGCAAGTACATGGTAAAGGGACTA
ACCTACTCACGGGTATTATACGTTGTCCCCAGTGTGGCGCAGCCATGGCCGCTAGCAATACAACGAATACACTCAAAGAT
GGCACTAAGAAACGTATCCGTTACTATTCCTGTAGCAACTTTCGAAATAAAGGGTCTAAAGTGTGCTCAGCGAATAGTGT
CAGAGCTGAAGTCATTGAAAAATATGTCATGGACCAAATACTGGAAATTGTCAAAAGTGACAAAGTCATCAAAAAGGTTG
TCGAACGTGTCAATCAAGAGAATAGAGTCGATGTAGCTGCGCTCAATCATGATACTGCCTATAAACAACAACAATTTGAT
GAAATTAACACTAAACTTAAAAATCTAGTTCAAACCATCGAAGACAATCCAGACTTAACATCTGCACTCAAACCAACCAT
TCATCAATATGAAACACAACTCAATGACATTACAAACCAAATGAATCAACTAAAGCAGCAACAAAATCAAGAGAAACCAT
CTTATAATACGAAACAAATCGCTGCCCTATTACAACGAATATTTCAAAATATAGAATCCATGGATAAATCACAACTCAAG
GCATTATACCTTACGGTCATTGACCGTATTGACATTCGTAAAGATGAGAATCATAAAAAGCAATTCTATGTCACACTCAA
GCTCAATAATGAGATTATTAAACAACTTTTCAATAATAAACAACTCGACGAAGTGCACCTCAGCACTTCGTTTTTATTTT
TGCCTCAAACACTCTACTTTCAAATCTAG

Domains

Predicted by InterproScan.

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)

Recombinase (Recombinase)

(180-279)

Resolvase, N terminal domain (Resolvase)

(11-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

86.716

100

0.867