Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   RCF71_RS07495 Genome accession   NZ_CP133244
Coordinates   1516796..1517656 (-) Length   286 a.a.
NCBI ID   WP_037573317.1    Uniprot ID   A0AAX0ZHR1
Organism   Staphylococcus chromogenes strain IM     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1491144..1553971 1516796..1517656 within 0


Gene organization within MGE regions


Location: 1491144..1553971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCF71_RS07395 (RCF71_07370) - 1493274..1493579 (-) 306 WP_037573366.1 YlxQ family RNA-binding protein -
  RCF71_RS07400 (RCF71_07375) rnpM 1493576..1493863 (-) 288 WP_037573364.1 RNase P modulator RnpM -
  RCF71_RS07405 (RCF71_07380) nusA 1494034..1495066 (-) 1033 Protein_1423 transcription termination factor NusA -
  RCF71_RS07410 (RCF71_07385) rimP 1495086..1495553 (-) 468 WP_037573359.1 ribosome maturation factor RimP -
  RCF71_RS07415 (RCF71_07390) - 1495680..1499990 (-) 4311 WP_037573358.1 PolC-type DNA polymerase III -
  RCF71_RS07420 (RCF71_07395) - 1500188..1501894 (-) 1707 WP_037573356.1 proline--tRNA ligase -
  RCF71_RS07425 (RCF71_07400) rseP 1501922..1503202 (-) 1281 WP_037573354.1 RIP metalloprotease RseP -
  RCF71_RS07430 (RCF71_07405) - 1503209..1504339 (-) 1131 WP_037573956.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  RCF71_RS07435 (RCF71_07410) - 1504355..1505134 (-) 780 WP_037573352.1 phosphatidate cytidylyltransferase -
  RCF71_RS07440 (RCF71_07415) - 1505148..1505909 (-) 762 WP_037573351.1 isoprenyl transferase -
  RCF71_RS07445 (RCF71_07420) frr 1506059..1506613 (-) 555 WP_037573344.1 ribosome recycling factor -
  RCF71_RS07450 (RCF71_07425) pyrH 1506633..1507355 (-) 723 WP_037573342.1 UMP kinase -
  RCF71_RS07455 (RCF71_07430) tsf 1507509..1508390 (-) 882 WP_182465435.1 translation elongation factor Ts -
  RCF71_RS07460 (RCF71_07435) rpsB 1508605..1509378 (-) 774 WP_105965989.1 30S ribosomal protein S2 -
  RCF71_RS07465 (RCF71_07440) codY 1509540..1510313 (-) 774 WP_037573333.1 GTP-sensing pleiotropic transcriptional regulator CodY -
  RCF71_RS07470 (RCF71_07445) hslU 1510328..1511737 (-) 1410 WP_037573330.1 ATP-dependent protease ATPase subunit HslU -
  RCF71_RS07475 (RCF71_07450) hslV 1511754..1512296 (-) 543 WP_037573327.1 ATP-dependent protease subunit HslV -
  RCF71_RS07480 (RCF71_07455) xerC 1512302..1513192 (-) 891 WP_037573324.1 tyrosine recombinase XerC -
  RCF71_RS07485 (RCF71_07460) trmFO 1513314..1514618 (-) 1305 WP_037573322.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  RCF71_RS07490 (RCF71_07465) topA 1514631..1516700 (-) 2070 WP_037573320.1 type I DNA topoisomerase -
  RCF71_RS07495 (RCF71_07470) dprA 1516796..1517656 (-) 861 WP_037573317.1 DNA-processing protein DprA Machinery gene
  RCF71_RS07500 (RCF71_07475) sucD 1517961..1518869 (-) 909 WP_037573316.1 succinate--CoA ligase subunit alpha -
  RCF71_RS07505 (RCF71_07480) sucC 1518890..1520056 (-) 1167 WP_037573313.1 ADP-forming succinate--CoA ligase subunit beta -
  RCF71_RS07510 (RCF71_07485) - 1520281..1520550 (-) 270 WP_037573311.1 hypothetical protein -
  RCF71_RS07515 (RCF71_07490) - 1520629..1521408 (-) 780 WP_037573308.1 ribonuclease HII -
  RCF71_RS07520 (RCF71_07495) ylqF 1521389..1522279 (-) 891 WP_037573306.1 ribosome biogenesis GTPase YlqF -
  RCF71_RS07525 (RCF71_07500) - 1522511..1522873 (+) 363 WP_037573953.1 GtrA family protein -
  RCF71_RS07530 (RCF71_07505) - 1522892..1525498 (+) 2607 WP_105965245.1 YfhO family protein -
  RCF71_RS07535 (RCF71_07510) - 1525495..1528080 (+) 2586 WP_232160073.1 YfhO family protein -
  RCF71_RS07540 (RCF71_07515) - 1528135..1528776 (-) 642 WP_084276006.1 phosphatase PAP2 family protein -
  RCF71_RS07545 (RCF71_07520) rplS 1529083..1529433 (-) 351 WP_037573298.1 50S ribosomal protein L19 -
  RCF71_RS07550 (RCF71_07525) trmD 1529535..1530272 (-) 738 WP_037573295.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  RCF71_RS07555 (RCF71_07530) rimM 1530269..1530772 (-) 504 WP_037573292.1 ribosome maturation factor RimM -
  RCF71_RS07560 (RCF71_07535) rpsP 1530876..1531151 (-) 276 WP_037573289.1 30S ribosomal protein S16 -
  RCF71_RS07565 (RCF71_07540) ffh 1531396..1532763 (-) 1368 WP_037573286.1 signal recognition particle protein -
  RCF71_RS07570 (RCF71_07545) - 1532777..1533109 (-) 333 WP_037573283.1 putative DNA-binding protein -
  RCF71_RS07575 (RCF71_07550) ftsY 1533096..1534451 (-) 1356 WP_037573280.1 signal recognition particle-docking protein FtsY -
  RCF71_RS07580 (RCF71_07555) smc 1534452..1538017 (-) 3566 Protein_1458 chromosome segregation protein SMC -
  RCF71_RS07585 (RCF71_07560) rnc 1538021..1538692 (-) 672 WP_371874978.1 ribonuclease III -
  RCF71_RS07590 (RCF71_07565) - 1538861..1539094 (-) 234 WP_019165520.1 acyl carrier protein -
  RCF71_RS07595 (RCF71_07570) fabG 1539270..1540007 (-) 738 WP_037573270.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  RCF71_RS07600 (RCF71_07575) fabD 1540000..1540926 (-) 927 WP_037573267.1 ACP S-malonyltransferase -
  RCF71_RS07605 (RCF71_07580) plsX 1540919..1541905 (-) 987 WP_037573261.1 phosphate acyltransferase PlsX -
  RCF71_RS07610 (RCF71_07585) fapR 1541898..1542467 (-) 570 WP_037573258.1 transcription factor FapR -
  RCF71_RS07615 (RCF71_07590) - 1542555..1543004 (-) 450 WP_037573255.1 ASCH domain-containing protein -
  RCF71_RS07620 (RCF71_07595) recG 1543155..1545200 (-) 2046 WP_037573252.1 ATP-dependent DNA helicase RecG -
  RCF71_RS07625 (RCF71_07600) sdaAA 1545202..1546071 (-) 870 WP_037573250.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  RCF71_RS07630 (RCF71_07605) sdaAB 1546090..1546755 (-) 666 WP_037573246.1 L-serine ammonia-lyase, iron-sulfur-dependent subunit beta -
  RCF71_RS07635 (RCF71_07610) fakA 1546913..1548571 (-) 1659 WP_037573244.1 fatty acid kinase catalytic subunit FakA -
  RCF71_RS07640 (RCF71_07615) - 1548584..1548958 (-) 375 WP_037573243.1 Asp23/Gls24 family envelope stress response protein -
  RCF71_RS07645 (RCF71_07620) rpmB 1549365..1549553 (+) 189 WP_037564748.1 50S ribosomal protein L28 -
  RCF71_RS07650 (RCF71_07625) - 1549702..1550337 (-) 636 WP_037573242.1 thiamine diphosphokinase -
  RCF71_RS07655 (RCF71_07630) rpe 1550341..1550991 (-) 651 WP_037573241.1 ribulose-phosphate 3-epimerase -
  RCF71_RS07660 (RCF71_07635) rsgA 1550991..1551866 (-) 876 WP_037573240.1 ribosome small subunit-dependent GTPase A -
  RCF71_RS07665 (RCF71_07640) - 1552128..1553405 (-) 1278 WP_037573237.1 cytochrome P450 -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32258.29 Da        Isoelectric Point: 8.8761

>NTDB_id=872760 RCF71_RS07495 WP_037573317.1 1516796..1517656(-) (dprA) [Staphylococcus chromogenes strain IM]
MHYAGFTTNQIYQLFTSPVKSLQFEITPILKNHPLIHQKSHFYKKFLAFQSLDIDIIQSQLEAHRIVPLPIIDARFPSLL
KEIYHPPLLLYCKGNLNLFNDACYYPLAVVGARDFTAYGERAVEYLLHQMKHQPIVIVSGLAKGTDALAHHYALCNNIPT
IAVLGFGHFHHYPKHTQTLRTHIDKYAGGLSISEYPPTTAPAKFRFPERNRIISGLSKGVLVTEAKERSGALITLDQALE
QNRNVYVLPGDMFNPNTKGNLLRVKEGAEIVLSAEDILKDMNTSIQ

Nucleotide


Download         Length: 861 bp        

>NTDB_id=872760 RCF71_RS07495 WP_037573317.1 1516796..1517656(-) (dprA) [Staphylococcus chromogenes strain IM]
ATGCATTATGCTGGTTTTACGACAAATCAAATCTATCAACTATTTACATCTCCTGTGAAATCTTTACAATTTGAAATCAC
ACCTATTTTAAAAAATCATCCTCTAATCCATCAGAAGTCACATTTTTACAAAAAATTTTTAGCTTTCCAATCCTTAGACA
TTGATATCATCCAGTCTCAATTAGAGGCGCATCGTATTGTACCCCTCCCAATCATTGATGCACGATTTCCTTCATTATTA
AAAGAAATATATCATCCACCGTTATTACTCTATTGTAAGGGGAATTTAAATTTATTTAATGATGCGTGTTATTATCCTTT
AGCAGTTGTAGGCGCAAGAGATTTTACAGCTTATGGTGAACGGGCAGTTGAGTATTTATTACATCAGATGAAGCATCAGC
CTATCGTTATTGTGTCTGGTTTGGCAAAAGGAACTGATGCATTAGCCCATCATTATGCATTGTGTAACAACATCCCTACA
ATAGCTGTATTGGGCTTTGGTCATTTTCACCATTATCCTAAACATACTCAAACCCTAAGAACACATATTGATAAATATGC
AGGGGGTTTAAGTATCAGCGAATATCCACCAACCACTGCTCCAGCAAAATTTAGATTTCCTGAACGCAATCGTATCATAA
GTGGCTTAAGTAAAGGAGTGCTCGTCACAGAGGCGAAAGAAAGAAGCGGTGCATTAATAACATTAGATCAAGCGTTAGAA
CAAAATCGTAATGTTTATGTTTTACCTGGAGATATGTTTAACCCCAATACAAAAGGAAATTTATTGCGTGTAAAGGAAGG
TGCCGAAATCGTACTTTCTGCGGAGGATATTTTAAAAGATATGAATACGTCAATTCAGTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

52.65

98.951

0.521
  dprA Staphylococcus aureus N315

52.297

98.951

0.517
  dprA Bacillus subtilis subsp. subtilis str. 168

38.007

94.755

0.36