Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | RCF71_RS06245 | Genome accession | NZ_CP133244 |
| Coordinates | 1250464..1251438 (+) | Length | 324 a.a. |
| NCBI ID | WP_037573899.1 | Uniprot ID | A0AAE5T169 |
| Organism | Staphylococcus chromogenes strain IM | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1245464..1256438
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RCF71_RS06210 (RCF71_06190) | rpmG | 1245918..1246082 (+) | 165 | WP_255201399.1 | 50S ribosomal protein L33 | - |
| RCF71_RS06215 (RCF71_06195) | - | 1246278..1246817 (+) | 540 | WP_037573917.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| RCF71_RS06220 (RCF71_06200) | - | 1246835..1248274 (+) | 1440 | WP_037573914.1 | rhomboid family intramembrane serine protease | - |
| RCF71_RS06225 (RCF71_06205) | - | 1248276..1248479 (+) | 204 | WP_037573910.1 | YqgQ family protein | - |
| RCF71_RS06230 (RCF71_06210) | - | 1248476..1249462 (+) | 987 | WP_037573907.1 | ROK family glucokinase | - |
| RCF71_RS06235 (RCF71_06215) | - | 1249463..1249774 (+) | 312 | WP_419790237.1 | MTH1187 family thiamine-binding protein | - |
| RCF71_RS06240 (RCF71_06220) | - | 1249788..1250411 (+) | 624 | WP_037573902.1 | MBL fold metallo-hydrolase | - |
| RCF71_RS06245 (RCF71_06225) | comGA | 1250464..1251438 (+) | 975 | WP_037573899.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| RCF71_RS06250 (RCF71_06230) | comGB | 1251407..1252474 (+) | 1068 | WP_037573896.1 | competence type IV pilus assembly protein ComGB | - |
| RCF71_RS06255 (RCF71_06235) | comGC | 1252489..1252806 (+) | 318 | WP_037573894.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| RCF71_RS06260 (RCF71_06240) | comGD | 1252796..1253227 (+) | 432 | WP_051604961.1 | competence type IV pilus minor pilin ComGD | - |
| RCF71_RS06265 (RCF71_06245) | - | 1253420..1253905 (+) | 486 | WP_157946193.1 | competence type IV pilus minor pilin ComGF | - |
| RCF71_RS06270 (RCF71_06250) | - | 1254070..1254594 (+) | 525 | WP_084276016.1 | shikimate kinase | - |
| RCF71_RS06275 (RCF71_06255) | gcvT | 1254747..1255838 (+) | 1092 | WP_037573883.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 37089.84 Da Isoelectric Point: 7.4356
>NTDB_id=872754 RCF71_RS06245 WP_037573899.1 1250464..1251438(+) (comGA) [Staphylococcus chromogenes strain IM]
MQLLLDHVLQYAITHDASDVHFIPTASQVDVKLRIKDNLKTFDTLNLETYQRILTLLKFKSGLDVSSRHRAQSGRYIYEY
QELYYLRVSTLPLNLGTESCVIRITPQIFQTDKLQTTNDIRKIMEKKQGLILFSGPTGAGKSTLMYQMVVYAKEILNLNI
ITIEDPVEQLVNGITQISVNEKADITYGSSLKAILRCDPDVILIGEIRDKQIAKEVTQASLSGHLVLSTIHANDCQGVLL
RLIEMGITKQDLIQSLNMIVNQRLITTKNNDRRLVYETMTSLDIQYFLNHNFTLPDSFKSLSEKLYDLQKEGEIDEQTLR
KYKK
MQLLLDHVLQYAITHDASDVHFIPTASQVDVKLRIKDNLKTFDTLNLETYQRILTLLKFKSGLDVSSRHRAQSGRYIYEY
QELYYLRVSTLPLNLGTESCVIRITPQIFQTDKLQTTNDIRKIMEKKQGLILFSGPTGAGKSTLMYQMVVYAKEILNLNI
ITIEDPVEQLVNGITQISVNEKADITYGSSLKAILRCDPDVILIGEIRDKQIAKEVTQASLSGHLVLSTIHANDCQGVLL
RLIEMGITKQDLIQSLNMIVNQRLITTKNNDRRLVYETMTSLDIQYFLNHNFTLPDSFKSLSEKLYDLQKEGEIDEQTLR
KYKK
Nucleotide
Download Length: 975 bp
>NTDB_id=872754 RCF71_RS06245 WP_037573899.1 1250464..1251438(+) (comGA) [Staphylococcus chromogenes strain IM]
ATGCAGTTATTATTAGACCATGTATTACAGTATGCCATAACCCATGACGCTTCAGATGTCCACTTTATTCCAACCGCTTC
CCAAGTTGATGTAAAATTGAGAATAAAAGATAACTTAAAGACATTTGACACTCTGAATCTAGAGACATACCAAAGAATTT
TAACTTTACTCAAGTTCAAATCAGGTTTAGATGTTTCTTCACGCCATAGAGCTCAAAGTGGGCGATACATCTATGAGTAC
CAAGAACTGTATTATTTGCGTGTTTCTACATTACCACTAAACTTGGGCACTGAAAGTTGTGTAATAAGAATAACGCCGCA
AATATTTCAGACAGACAAACTTCAAACCACTAACGACATTCGTAAAATAATGGAGAAAAAACAAGGACTCATCTTATTTA
GTGGCCCAACAGGAGCTGGTAAAAGTACACTCATGTATCAAATGGTCGTTTATGCTAAAGAAATATTAAATTTAAATATT
ATTACTATAGAAGACCCTGTAGAGCAGCTCGTTAACGGCATTACTCAAATTTCTGTAAATGAAAAAGCAGACATCACATA
TGGTAGTTCTCTTAAAGCTATTTTACGTTGTGATCCTGATGTTATATTAATCGGGGAGATACGAGACAAACAAATTGCCA
AAGAAGTGACGCAAGCAAGTTTAAGTGGACATCTCGTCTTGTCAACGATTCATGCGAATGATTGTCAAGGTGTCTTATTA
AGACTCATTGAAATGGGCATTACCAAACAAGATTTAATACAATCATTAAATATGATCGTTAATCAAAGACTAATCACAAC
TAAAAACAACGATAGAAGATTAGTCTATGAAACCATGACAAGTTTAGACATTCAATACTTTCTAAACCACAATTTTACAT
TGCCAGATTCATTTAAAAGTTTAAGTGAAAAACTTTATGACTTACAAAAGGAAGGGGAGATTGATGAACAAACTTTACGA
AAGTATAAAAAATAA
ATGCAGTTATTATTAGACCATGTATTACAGTATGCCATAACCCATGACGCTTCAGATGTCCACTTTATTCCAACCGCTTC
CCAAGTTGATGTAAAATTGAGAATAAAAGATAACTTAAAGACATTTGACACTCTGAATCTAGAGACATACCAAAGAATTT
TAACTTTACTCAAGTTCAAATCAGGTTTAGATGTTTCTTCACGCCATAGAGCTCAAAGTGGGCGATACATCTATGAGTAC
CAAGAACTGTATTATTTGCGTGTTTCTACATTACCACTAAACTTGGGCACTGAAAGTTGTGTAATAAGAATAACGCCGCA
AATATTTCAGACAGACAAACTTCAAACCACTAACGACATTCGTAAAATAATGGAGAAAAAACAAGGACTCATCTTATTTA
GTGGCCCAACAGGAGCTGGTAAAAGTACACTCATGTATCAAATGGTCGTTTATGCTAAAGAAATATTAAATTTAAATATT
ATTACTATAGAAGACCCTGTAGAGCAGCTCGTTAACGGCATTACTCAAATTTCTGTAAATGAAAAAGCAGACATCACATA
TGGTAGTTCTCTTAAAGCTATTTTACGTTGTGATCCTGATGTTATATTAATCGGGGAGATACGAGACAAACAAATTGCCA
AAGAAGTGACGCAAGCAAGTTTAAGTGGACATCTCGTCTTGTCAACGATTCATGCGAATGATTGTCAAGGTGTCTTATTA
AGACTCATTGAAATGGGCATTACCAAACAAGATTTAATACAATCATTAAATATGATCGTTAATCAAAGACTAATCACAAC
TAAAAACAACGATAGAAGATTAGTCTATGAAACCATGACAAGTTTAGACATTCAATACTTTCTAAACCACAATTTTACAT
TGCCAGATTCATTTAAAAGTTTAAGTGAAAAACTTTATGACTTACAAAAGGAAGGGGAGATTGATGAACAAACTTTACGA
AAGTATAAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
58.204 |
99.691 |
0.58 |
| comGA | Staphylococcus aureus N315 |
58.204 |
99.691 |
0.58 |