Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   RCF71_RS04160 Genome accession   NZ_CP133244
Coordinates   877908..878537 (+) Length   209 a.a.
NCBI ID   WP_037575783.1    Uniprot ID   A0AAE5SZX5
Organism   Staphylococcus chromogenes strain IM     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 872908..883537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCF71_RS04135 (RCF71_04115) - 873579..874589 (-) 1011 WP_105965742.1 FUSC family protein -
  RCF71_RS04140 (RCF71_04120) map 874921..875679 (+) 759 WP_037575776.1 type I methionyl aminopeptidase -
  RCF71_RS04145 (RCF71_04125) - 875775..876164 (+) 390 WP_037575778.1 hypothetical protein -
  RCF71_RS04150 (RCF71_04130) liaF 876177..876878 (+) 702 WP_037575779.1 cell wall-active antibiotics response protein LiaF -
  RCF71_RS04155 (RCF71_04135) vraS 876875..877918 (+) 1044 WP_037575781.1 sensor histidine kinase Regulator
  RCF71_RS04160 (RCF71_04140) vraR 877908..878537 (+) 630 WP_037575783.1 response regulator transcription factor Regulator
  RCF71_RS04165 (RCF71_04145) - 878741..879313 (-) 573 WP_037575784.1 beta-class carbonic anhydrase -
  RCF71_RS04170 (RCF71_04150) - 879356..880624 (-) 1269 WP_037575786.1 YihY/virulence factor BrkB family protein -
  RCF71_RS04175 (RCF71_04155) - 880750..881025 (-) 276 WP_037575789.1 YtxH domain-containing protein -
  RCF71_RS04180 (RCF71_04160) - 881030..881488 (-) 459 WP_037575792.1 low molecular weight protein-tyrosine-phosphatase -
  RCF71_RS04185 (RCF71_04165) - 881621..881830 (+) 210 WP_037575795.1 DUF1128 domain-containing protein -
  RCF71_RS04190 (RCF71_04170) - 881861..883090 (+) 1230 WP_232160171.1 aminopeptidase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23432.11 Da        Isoelectric Point: 5.1755

>NTDB_id=872745 RCF71_RS04160 WP_037575783.1 877908..878537(+) (vraR) [Staphylococcus chromogenes strain IM]
MTIKVLFVDDHEMVRIGISSYLSTQPDIEVVGEGASGKEAIEKAHALKPDLILMDLVMTDMDGVEATTQIKKDLPKIKVV
MLTSYIEDKEVYRALDAGVDSYILKTTSASDIAEAIRKTSKGESVFEAEVLVKMRNRMRQRAELYELLTEREMEILLLIS
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHGLIE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=872745 RCF71_RS04160 WP_037575783.1 877908..878537(+) (vraR) [Staphylococcus chromogenes strain IM]
ATGACAATTAAAGTTTTATTTGTAGATGACCACGAAATGGTAAGAATTGGTATCTCAAGTTATTTATCTACGCAGCCAGA
TATTGAAGTTGTTGGGGAAGGGGCTTCGGGTAAAGAAGCCATCGAAAAAGCGCATGCATTAAAACCTGATTTAATTTTAA
TGGATTTAGTGATGACGGATATGGACGGAGTAGAGGCGACGACGCAAATTAAGAAAGATTTACCTAAAATCAAAGTCGTG
ATGCTTACAAGTTATATTGAGGATAAAGAAGTCTACCGTGCATTAGATGCAGGTGTAGACAGTTATATTTTAAAAACAAC
AAGCGCCAGCGACATTGCCGAAGCCATTCGCAAAACATCTAAAGGGGAATCTGTCTTTGAAGCAGAAGTACTCGTTAAAA
TGAGGAATCGTATGCGACAACGTGCAGAACTTTACGAGCTTTTAACCGAAAGAGAAATGGAAATTTTATTATTAATTTCA
AAAGGCTATTCTAATCAAGAAATTGCGAGCGCTTCACATATAACGATTAAAACCGTTAAAACACATGTTAGTAACATTTT
AAGTAAACTTGAAGTTCAAGACCGTACACAAGCAGTGATATATGCTTTCCAACATGGGCTCATAGAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(147-202)

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

90.909

100

0.909
  degU Bacillus subtilis subsp. subtilis str. 168

35.714

100

0.383