Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   RCF71_RS00845 Genome accession   NZ_CP133244
Coordinates   177541..178206 (+) Length   221 a.a.
NCBI ID   WP_037576682.1    Uniprot ID   A0AAE5W7F6
Organism   Staphylococcus chromogenes strain IM     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 172541..183206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCF71_RS00825 (RCF71_00820) - 173097..174482 (-) 1386 WP_037576692.1 amino acid permease -
  RCF71_RS00830 (RCF71_00825) - 175077..175625 (+) 549 WP_037576688.1 DUF4064 domain-containing protein -
  RCF71_RS00835 (RCF71_00830) - 175727..176890 (+) 1164 WP_037576686.1 amidohydrolase -
  RCF71_RS00840 (RCF71_00835) - 176975..177412 (-) 438 WP_255201699.1 VOC family protein -
  RCF71_RS00845 (RCF71_00840) braR 177541..178206 (+) 666 WP_037576682.1 response regulator transcription factor Regulator
  RCF71_RS00850 (RCF71_00845) braS 178235..179125 (+) 891 WP_232160146.1 sensor histidine kinase Regulator
  RCF71_RS00855 (RCF71_00850) - 179215..179964 (+) 750 WP_037576681.1 ABC transporter ATP-binding protein -
  RCF71_RS00860 (RCF71_00855) - 179966..181948 (+) 1983 WP_037576678.1 FtsX-like permease family protein -
  RCF71_RS00865 (RCF71_00860) - 181994..182620 (-) 627 WP_037576676.1 FMN-dependent NADH-azoreductase -
  RCF71_RS00870 (RCF71_00865) spn 182856..183176 (-) 321 WP_037576673.1 SPIN family peroxidase inhibitor -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25875.14 Da        Isoelectric Point: 6.4870

>NTDB_id=872738 RCF71_RS00845 WP_037576682.1 177541..178206(+) (braR) [Staphylococcus chromogenes strain IM]
MKIMIVEDDFTIANSLVQELRKWNHEAINVQDYIHIKDRFLEMKPHLILLDINLPNFNGFHWCQEIRKASNVPIIFISSA
SDNMNQMMAMQMGADDFIEKPFNLNLTIMKIQALLRRSYDFKVEQTELNVKGCQLITEKALLYYQGQTISLTLTELQILQ
LLFLNEDQFVSRNALIEQCWQSENFIDDNTLAVNMSRLRKKLKQLGLTELIQTKKNVGYKV

Nucleotide


Download         Length: 666 bp        

>NTDB_id=872738 RCF71_RS00845 WP_037576682.1 177541..178206(+) (braR) [Staphylococcus chromogenes strain IM]
ATGAAGATTATGATTGTTGAAGATGATTTCACGATTGCCAATAGTTTAGTGCAAGAATTACGTAAGTGGAATCATGAAGC
GATAAATGTTCAAGATTATATACATATTAAAGACCGTTTTTTAGAAATGAAGCCGCACTTAATTTTATTAGATATTAACC
TCCCGAATTTCAACGGTTTCCACTGGTGTCAGGAAATACGTAAAGCGTCAAACGTCCCTATTATTTTCATCAGTTCAGCC
TCTGATAATATGAACCAAATGATGGCCATGCAAATGGGAGCGGATGATTTTATTGAAAAACCATTCAATTTAAATTTAAC
CATTATGAAAATACAGGCGCTATTAAGAAGGTCTTACGATTTTAAAGTGGAACAAACGGAACTCAACGTTAAAGGATGTC
AGTTAATCACGGAAAAGGCATTACTTTATTATCAAGGTCAAACCATTTCACTTACCTTAACGGAACTTCAAATTTTACAA
TTGCTGTTTTTAAATGAAGATCAATTTGTCAGTCGTAATGCGCTGATAGAACAGTGTTGGCAATCCGAAAATTTTATAGA
TGATAATACATTGGCCGTCAATATGTCACGTTTACGAAAAAAATTAAAACAATTAGGATTAACAGAGTTGATTCAAACGA
AGAAAAATGTCGGATACAAAGTGTAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(146-220)

Response regulator receiver domain (Response_reg)

(3-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

68.326

100

0.683