Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   RCF71_RS00210 Genome accession   NZ_CP133244
Coordinates   47449..48798 (-) Length   449 a.a.
NCBI ID   WP_105966013.1    Uniprot ID   -
Organism   Staphylococcus chromogenes strain IM     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 42449..53798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCF71_RS00195 (RCF71_00195) - 42458..42796 (-) 339 WP_105966010.1 SAUGI family uracil-DNA glycosylase inhibitor -
  RCF71_RS00200 (RCF71_00200) - 43457..45748 (+) 2292 WP_105966011.1 CDP-glycerol glycerophosphotransferase family protein -
  RCF71_RS00205 (RCF71_00205) ccrB 45801..47429 (-) 1629 WP_105966012.1 cassette chromosome recombinase CcrB Machinery gene
  RCF71_RS00210 (RCF71_00210) ccrA 47449..48798 (-) 1350 WP_105966013.1 cassette chromosome recombinase CcrA Machinery gene
  RCF71_RS00215 (RCF71_00215) - 48984..49259 (-) 276 WP_105966014.1 hypothetical protein -
  RCF71_RS00220 (RCF71_00220) cch1 49317..51095 (-) 1779 WP_105966015.1 cassette chromosome replicative helicase -
  RCF71_RS00225 (RCF71_00225) ssb 51095..51340 (-) 246 WP_105966016.1 cassette chromosome ssDNA-binding protein -
  RCF71_RS00230 (RCF71_00230) - 51478..51696 (+) 219 WP_419790312.1 hypothetical protein -
  RCF71_RS00235 (RCF71_00235) - 51948..52523 (+) 576 WP_241955967.1 hypothetical protein -
  RCF71_RS00240 (RCF71_00240) tnpA 52776..53242 (+) 467 Protein_45 IS200/IS605 family transposase -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52256.87 Da        Isoelectric Point: 9.8924

>NTDB_id=872737 RCF71_RS00210 WP_105966013.1 47449..48798(-) (ccrA) [Staphylococcus chromogenes strain IM]
MKQAIGYLRQSTIKQQSLSAQKQTIKALAEKYNIQHITFYSDKQSGRTDKRNGYQQVITLIQQGHCDVLCCYRLNRLHRN
LKNALKLIRLCQKHQVHILSVCDGYFNLDSSFDRLKLNIFISLAELESDNISEQVKNGLREKARQGKLITTHSPFGYHYH
DGTFTINKDEAPTVKAIFDDYVEGYGYKKISQHLEKSNHLINRKPFQVRCIILNPNYCGRVLNQYGQYDNMFPPIVSVSL
YEYAQKVRNQRQVNRRSSDNQLKQKIKCPCCGSTLTNLTIRKKKHALRYYVCPRNMNASRFVCDFKGINAQMLETRVLTT
CKDFFQNQQLYSKINQTIQQQLKNQRTLETKHTLTQEQLIEKLAQGTITADTFREKSLLLQQQSKTNSSISSTQIQRAFQ
NVIQQCFTLNMLYPYIDEIHITENKTLTGIYFKNEPLNIVNQDMQSSIA

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=872737 RCF71_RS00210 WP_105966013.1 47449..48798(-) (ccrA) [Staphylococcus chromogenes strain IM]
ATGAAACAAGCCATTGGTTACTTACGTCAAAGCACAATAAAACAACAATCACTCTCAGCCCAAAAACAAACCATCAAGGC
ATTAGCCGAAAAGTATAATATTCAACACATTACCTTTTATAGCGATAAGCAATCAGGTCGAACTGATAAACGCAATGGTT
ACCAACAAGTCATTACGCTAATTCAACAAGGTCACTGTGACGTATTATGTTGCTACAGACTGAATCGATTACACCGAAAT
TTGAAAAATGCTTTGAAACTTATCAGATTATGTCAAAAGCATCAGGTTCATATCTTAAGTGTCTGTGATGGCTATTTCAA
CTTAGACTCATCTTTTGATCGTTTAAAACTTAACATTTTCATCAGCCTTGCAGAGTTAGAATCTGATAATATCAGTGAAC
AGGTCAAAAATGGACTACGCGAAAAAGCTCGCCAAGGTAAACTCATTACAACTCACTCCCCTTTTGGCTATCACTATCAC
GATGGGACATTTACTATAAATAAGGATGAAGCACCTACTGTAAAAGCCATATTCGACGACTACGTGGAAGGTTACGGATA
CAAGAAAATTTCTCAACACTTAGAAAAATCCAATCACCTCATCAACCGAAAACCTTTCCAAGTGCGTTGTATTATCCTAA
ATCCTAATTACTGTGGCCGAGTGCTAAATCAATATGGCCAATACGATAATATGTTCCCCCCTATTGTTTCAGTCAGCTTG
TATGAATACGCTCAAAAAGTCAGAAACCAAAGACAAGTTAATCGTAGATCTTCAGACAACCAACTCAAACAAAAAATCAA
ATGCCCTTGTTGTGGTTCAACGCTCACCAATCTGACCATTAGGAAAAAGAAGCACGCATTGCGTTATTATGTTTGTCCAA
GAAATATGAATGCTTCACGTTTTGTCTGTGATTTCAAGGGCATCAATGCACAAATGCTAGAAACAAGGGTCTTAACAACT
TGTAAGGACTTTTTTCAAAATCAACAGCTCTATTCAAAAATTAATCAAACAATCCAACAACAACTAAAAAACCAAAGAAC
TTTGGAAACGAAACATACACTCACCCAAGAACAACTAATAGAAAAGCTCGCTCAAGGGACGATTACTGCAGATACATTCA
GAGAAAAATCTCTACTGTTACAACAACAATCAAAAACCAATTCATCCATTAGCTCGACTCAAATTCAAAGGGCTTTTCAA
AATGTCATTCAACAATGTTTCACGTTAAATATGTTATACCCCTATATTGATGAAATTCATATTACAGAAAACAAAACGCT
TACAGGAATCTATTTCAAAAATGAACCCTTAAACATCGTCAATCAAGATATGCAATCATCGATTGCTTAA

Domains

Predicted by InterproScan.

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-321)

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase (Recombinase)

(169-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

76.392

100

0.764
  ccrA Staphylococcus aureus N315

71.269

100

0.713