Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   RCF71_RS00205 Genome accession   NZ_CP133244
Coordinates   45801..47429 (-) Length   542 a.a.
NCBI ID   WP_105966012.1    Uniprot ID   -
Organism   Staphylococcus chromogenes strain IM     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 40801..52429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCF71_RS00180 (RCF71_00180) - 41295..41510 (-) 216 WP_105966007.1 hypothetical protein -
  RCF71_RS00185 (RCF71_00185) - 41529..42038 (-) 510 WP_105966008.1 DUF1643 domain-containing protein -
  RCF71_RS00190 (RCF71_00190) - 42051..42362 (-) 312 WP_105966009.1 DUF960 family protein -
  RCF71_RS00195 (RCF71_00195) - 42458..42796 (-) 339 WP_105966010.1 SAUGI family uracil-DNA glycosylase inhibitor -
  RCF71_RS00200 (RCF71_00200) - 43457..45748 (+) 2292 WP_105966011.1 CDP-glycerol glycerophosphotransferase family protein -
  RCF71_RS00205 (RCF71_00205) ccrB 45801..47429 (-) 1629 WP_105966012.1 cassette chromosome recombinase CcrB Machinery gene
  RCF71_RS00210 (RCF71_00210) ccrA 47449..48798 (-) 1350 WP_105966013.1 cassette chromosome recombinase CcrA Machinery gene
  RCF71_RS00215 (RCF71_00215) - 48984..49259 (-) 276 WP_105966014.1 hypothetical protein -
  RCF71_RS00220 (RCF71_00220) cch1 49317..51095 (-) 1779 WP_105966015.1 cassette chromosome replicative helicase -
  RCF71_RS00225 (RCF71_00225) ssb 51095..51340 (-) 246 WP_105966016.1 cassette chromosome ssDNA-binding protein -
  RCF71_RS00230 (RCF71_00230) - 51478..51696 (+) 219 WP_419790312.1 hypothetical protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62492.59 Da        Isoelectric Point: 9.8615

>NTDB_id=872736 RCF71_RS00205 WP_105966012.1 45801..47429(-) (ccrB) [Staphylococcus chromogenes strain IM]
MEKLKQKRVGIYVRVSTEMQSSEGYSITGQINQIEEYCQFNNFKVVDVYEDRGISGKSMNRPALQRMLQDAKNGHIDCVM
VYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVSTSSGKLMLQVLASFAEFERNNIVDNIFMGQTIRAKEGYYQGN
LPLGYEKIPDSKHELMINQHEANIVKYIFEAYAKGHGYRKIANALNHKGYVTKKGKPFSVGSITYILSNPFYIGQIQFAK
YKDWNEKRRKGINDKPVIAQGKHSPIISQDLWDKVQMRKKQIKEKPQVHGKGTNLLTGIIRCPQCGAAMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVIKQVVERVNQENRVDVAALNHDIAYKQQQFD
EINTKLKNLVQTIEDNPDLTSALKPTIHQYETQLNDITNQMNQLKQQQNQDKPNYDTNQIATLLKQIFQNIETLDKSQLK
ALYLSVIDRIDIRKDTHHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLFLQI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=872736 RCF71_RS00205 WP_105966012.1 45801..47429(-) (ccrB) [Staphylococcus chromogenes strain IM]
ATGGAAAAACTTAAACAAAAGCGTGTGGGAATTTATGTACGCGTATCGACTGAGATGCAGAGCTCAGAAGGCTACTCGAT
AACAGGCCAGATCAATCAGATTGAAGAATACTGTCAATTTAATAACTTCAAAGTGGTAGATGTATACGAAGATCGTGGTA
TTTCCGGAAAATCTATGAACCGCCCTGCACTACAACGTATGTTACAAGACGCTAAAAATGGTCATATCGATTGTGTTATG
GTCTACAAAACAAATCGATTAGCACGTAATACATCTGACCTACTCAAAATCGTTGAAGATTTGCATAAACAAAATGTCGA
ATTTTTCAGTCTGTCTGAACGTATGGAAGTTAGCACGAGTAGTGGTAAGCTCATGCTGCAGGTGCTTGCGAGCTTCGCAG
AATTTGAACGCAATAATATTGTAGACAATATCTTTATGGGCCAGACAATTAGAGCGAAAGAAGGGTATTATCAAGGCAAT
TTGCCGTTAGGTTATGAAAAAATACCCGATAGTAAACATGAACTGATGATTAATCAACATGAAGCCAATATTGTGAAATA
TATATTTGAAGCTTACGCTAAAGGTCATGGTTACCGTAAAATTGCTAATGCGTTGAATCATAAAGGTTATGTCACTAAAA
AAGGCAAACCCTTTAGTGTGGGTTCTATAACCTATATCCTATCTAACCCCTTCTACATTGGACAAATTCAGTTTGCGAAA
TACAAAGACTGGAATGAAAAGCGTCGTAAGGGGATAAACGATAAACCTGTCATCGCTCAGGGAAAGCATTCTCCTATTAT
AAGCCAAGATTTGTGGGACAAAGTCCAAATGCGTAAGAAACAAATCAAAGAAAAGCCGCAAGTACATGGTAAAGGGACTA
ACCTACTCACGGGTATTATACGTTGTCCCCAGTGTGGCGCAGCCATGGCCGCTAGCAATACAACGAATACACTCAAAGAT
GGCACTAAGAAACGTATCCGTTACTATTCCTGTAGCAACTTTCGCAACAAAGGATCAAAGGTATGTTCAGCCAATAGTGT
TAGAGCTGATGTTATCGAAAAGTATGTTATGGATCAAATACTCGAAATAGTCAAAAGTGATAAAGTTATCAAACAAGTTG
TCGAACGTGTCAATCAAGAGAATAGAGTCGATGTAGCTGCGCTCAATCATGATATTGCTTATAAACAACAACAATTTGAT
GAAATTAACACTAAACTTAAAAATCTAGTTCAAACCATCGAAGACAATCCAGACTTAACATCTGCACTCAAACCAACCAT
TCATCAATATGAAACACAACTCAATGACATTACAAACCAAATGAATCAACTAAAGCAGCAACAAAATCAAGATAAACCCA
ACTATGATACTAATCAAATCGCTACTCTATTAAAACAAATATTTCAAAATATAGAGACCTTGGATAAATCACAGCTTAAA
GCATTATACCTTTCGGTGATTGATCGTATTGATATTCGTAAGGACACTCATCACAAGAAGCAATTCTACGTCACACTCAA
GCTCAATAATGAAATTATCAAACAACTTTTCAATAATAAACAACTCGACGAAGTGCACCTCAGCACTTCGTCTTTATTTT
TGCCTCAAACGCTCTTTCTTCAAATCTGA

Domains

Predicted by InterproScan.

Recombinase (Recombinase)

(180-279)

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)

Resolvase, N terminal domain (Resolvase)

(11-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

83.764

100

0.838