Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   RCF72_RS06895 Genome accession   NZ_CP133242
Coordinates   1419218..1420078 (-) Length   286 a.a.
NCBI ID   WP_037573317.1    Uniprot ID   A0AAX0ZHR1
Organism   Staphylococcus chromogenes strain BTM     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1414218..1425078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCF72_RS06880 (RCF72_06845) xerC 1414724..1415614 (-) 891 WP_037573324.1 tyrosine recombinase XerC -
  RCF72_RS06885 (RCF72_06850) trmFO 1415736..1417040 (-) 1305 WP_037573322.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  RCF72_RS06890 (RCF72_06855) topA 1417053..1419122 (-) 2070 WP_037573320.1 type I DNA topoisomerase -
  RCF72_RS06895 (RCF72_06860) dprA 1419218..1420078 (-) 861 WP_037573317.1 DNA-processing protein DprA Machinery gene
  RCF72_RS06900 (RCF72_06865) sucD 1420383..1421291 (-) 909 WP_037573316.1 succinate--CoA ligase subunit alpha -
  RCF72_RS06905 (RCF72_06870) sucC 1421312..1422478 (-) 1167 WP_103159284.1 ADP-forming succinate--CoA ligase subunit beta -
  RCF72_RS06910 (RCF72_06875) - 1422703..1422972 (-) 270 WP_037573311.1 hypothetical protein -
  RCF72_RS06915 (RCF72_06880) - 1423051..1423830 (-) 780 WP_037573308.1 ribonuclease HII -
  RCF72_RS06920 (RCF72_06885) ylqF 1423811..1424701 (-) 891 WP_037573306.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32258.29 Da        Isoelectric Point: 8.8761

>NTDB_id=872725 RCF72_RS06895 WP_037573317.1 1419218..1420078(-) (dprA) [Staphylococcus chromogenes strain BTM]
MHYAGFTTNQIYQLFTSPVKSLQFEITPILKNHPLIHQKSHFYKKFLAFQSLDIDIIQSQLEAHRIVPLPIIDARFPSLL
KEIYHPPLLLYCKGNLNLFNDACYYPLAVVGARDFTAYGERAVEYLLHQMKHQPIVIVSGLAKGTDALAHHYALCNNIPT
IAVLGFGHFHHYPKHTQTLRTHIDKYAGGLSISEYPPTTAPAKFRFPERNRIISGLSKGVLVTEAKERSGALITLDQALE
QNRNVYVLPGDMFNPNTKGNLLRVKEGAEIVLSAEDILKDMNTSIQ

Nucleotide


Download         Length: 861 bp        

>NTDB_id=872725 RCF72_RS06895 WP_037573317.1 1419218..1420078(-) (dprA) [Staphylococcus chromogenes strain BTM]
ATGCATTATGCTGGTTTTACGACAAATCAAATCTATCAACTATTTACATCTCCTGTGAAATCTTTACAATTTGAAATCAC
ACCTATTTTAAAAAATCATCCTCTAATCCATCAGAAGTCTCATTTTTACAAAAAATTTTTAGCTTTCCAATCCTTAGACA
TTGATATCATCCAGTCTCAATTAGAGGCGCATCGTATTGTACCCCTCCCAATCATTGATGCACGATTTCCTTCATTATTA
AAAGAAATATATCATCCACCGTTATTACTCTATTGTAAGGGGAATTTAAATTTATTTAATGATGCGTGTTATTATCCCTT
AGCAGTTGTAGGCGCAAGAGATTTTACAGCTTATGGTGAACGGGCAGTTGAGTATTTATTACATCAGATGAAGCATCAGC
CTATCGTTATTGTGTCTGGTTTGGCAAAAGGAACTGATGCATTAGCCCATCATTATGCATTGTGTAACAACATCCCTACA
ATAGCTGTATTGGGCTTTGGTCATTTTCACCATTATCCTAAACATACTCAAACCCTAAGAACACATATTGATAAATATGC
AGGGGGTTTAAGTATCAGCGAATATCCACCAACCACTGCTCCAGCAAAATTTAGATTTCCTGAACGCAATCGTATCATAA
GTGGCTTAAGTAAAGGAGTTCTCGTCACAGAGGCGAAAGAAAGAAGCGGTGCATTAATAACATTAGATCAAGCGTTAGAA
CAAAATCGTAATGTTTATGTTTTACCTGGAGATATGTTTAACCCCAATACAAAAGGAAATTTATTGCGTGTAAAGGAAGG
TGCCGAAATCGTACTTTCTGCGGAGGATATTTTAAAAGATATGAATACGTCAATTCAGTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

52.65

98.951

0.521
  dprA Staphylococcus aureus N315

52.297

98.951

0.517
  dprA Bacillus subtilis subsp. subtilis str. 168

38.007

94.755

0.36