Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | RCF72_RS05645 | Genome accession | NZ_CP133242 |
| Coordinates | 1152817..1153791 (+) | Length | 324 a.a. |
| NCBI ID | WP_037573899.1 | Uniprot ID | A0AAE5T169 |
| Organism | Staphylococcus chromogenes strain BTM | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1147817..1158791
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RCF72_RS05610 (RCF72_05580) | rpmG | 1148271..1148435 (+) | 165 | WP_255201399.1 | 50S ribosomal protein L33 | - |
| RCF72_RS05615 (RCF72_05585) | - | 1148631..1149170 (+) | 540 | WP_037573917.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| RCF72_RS05620 (RCF72_05590) | - | 1149188..1150627 (+) | 1440 | WP_419791879.1 | rhomboid family intramembrane serine protease | - |
| RCF72_RS05625 (RCF72_05595) | - | 1150629..1150832 (+) | 204 | WP_037573910.1 | YqgQ family protein | - |
| RCF72_RS05630 (RCF72_05600) | - | 1150829..1151815 (+) | 987 | WP_419791880.1 | ROK family glucokinase | - |
| RCF72_RS05635 (RCF72_05605) | - | 1151816..1152127 (+) | 312 | WP_037573905.1 | MTH1187 family thiamine-binding protein | - |
| RCF72_RS05640 (RCF72_05610) | - | 1152141..1152764 (+) | 624 | WP_107398561.1 | MBL fold metallo-hydrolase | - |
| RCF72_RS05645 (RCF72_05615) | comGA | 1152817..1153791 (+) | 975 | WP_037573899.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| RCF72_RS05650 (RCF72_05620) | comGB | 1153760..1154827 (+) | 1068 | WP_419791881.1 | competence type IV pilus assembly protein ComGB | - |
| RCF72_RS05655 (RCF72_05625) | comGC | 1154842..1155159 (+) | 318 | WP_037573894.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| RCF72_RS05660 (RCF72_05630) | comGD | 1155149..1155580 (+) | 432 | WP_051604961.1 | competence type IV pilus minor pilin ComGD | - |
| RCF72_RS05665 (RCF72_05635) | - | 1155773..1156258 (+) | 486 | WP_157946193.1 | competence type IV pilus minor pilin ComGF | - |
| RCF72_RS05670 (RCF72_05640) | - | 1156423..1156947 (+) | 525 | WP_103159095.1 | shikimate kinase | - |
| RCF72_RS05675 (RCF72_05645) | gcvT | 1157100..1158191 (+) | 1092 | WP_105965325.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 37089.84 Da Isoelectric Point: 7.4356
>NTDB_id=872719 RCF72_RS05645 WP_037573899.1 1152817..1153791(+) (comGA) [Staphylococcus chromogenes strain BTM]
MQLLLDHVLQYAITHDASDVHFIPTASQVDVKLRIKDNLKTFDTLNLETYQRILTLLKFKSGLDVSSRHRAQSGRYIYEY
QELYYLRVSTLPLNLGTESCVIRITPQIFQTDKLQTTNDIRKIMEKKQGLILFSGPTGAGKSTLMYQMVVYAKEILNLNI
ITIEDPVEQLVNGITQISVNEKADITYGSSLKAILRCDPDVILIGEIRDKQIAKEVTQASLSGHLVLSTIHANDCQGVLL
RLIEMGITKQDLIQSLNMIVNQRLITTKNNDRRLVYETMTSLDIQYFLNHNFTLPDSFKSLSEKLYDLQKEGEIDEQTLR
KYKK
MQLLLDHVLQYAITHDASDVHFIPTASQVDVKLRIKDNLKTFDTLNLETYQRILTLLKFKSGLDVSSRHRAQSGRYIYEY
QELYYLRVSTLPLNLGTESCVIRITPQIFQTDKLQTTNDIRKIMEKKQGLILFSGPTGAGKSTLMYQMVVYAKEILNLNI
ITIEDPVEQLVNGITQISVNEKADITYGSSLKAILRCDPDVILIGEIRDKQIAKEVTQASLSGHLVLSTIHANDCQGVLL
RLIEMGITKQDLIQSLNMIVNQRLITTKNNDRRLVYETMTSLDIQYFLNHNFTLPDSFKSLSEKLYDLQKEGEIDEQTLR
KYKK
Nucleotide
Download Length: 975 bp
>NTDB_id=872719 RCF72_RS05645 WP_037573899.1 1152817..1153791(+) (comGA) [Staphylococcus chromogenes strain BTM]
ATGCAGTTATTATTAGACCATGTATTACAGTATGCCATAACCCATGACGCTTCAGATGTCCACTTTATTCCAACCGCTTC
CCAAGTTGATGTAAAATTGAGAATAAAAGATAACTTAAAGACATTTGACACTCTGAATCTAGAGACATACCAAAGAATTT
TAACTTTACTCAAGTTCAAATCAGGTTTAGATGTTTCTTCACGCCATAGAGCTCAAAGTGGGCGATACATCTATGAGTAC
CAAGAACTGTATTATTTGCGTGTTTCTACATTACCACTAAACTTGGGCACTGAAAGTTGTGTAATAAGAATAACGCCGCA
AATATTTCAGACAGACAAACTTCAAACCACTAACGACATTCGTAAAATAATGGAGAAAAAACAAGGACTCATCTTATTTA
GTGGCCCAACAGGAGCTGGTAAAAGTACACTCATGTATCAAATGGTCGTTTATGCTAAAGAAATATTAAATTTAAATATT
ATTACTATAGAAGACCCTGTAGAGCAGCTCGTTAACGGCATTACTCAAATTTCTGTAAATGAAAAAGCAGACATCACATA
TGGTAGTTCTCTTAAAGCTATTTTACGTTGTGATCCTGACGTTATATTAATCGGGGAGATACGAGACAAACAAATTGCCA
AAGAAGTGACGCAAGCAAGTTTAAGTGGACATCTCGTCTTGTCAACGATTCATGCGAATGATTGTCAAGGTGTCTTATTA
AGACTCATTGAAATGGGCATTACCAAACAAGATTTAATACAATCATTAAATATGATCGTTAATCAAAGACTAATCACAAC
TAAAAACAACGATAGAAGATTAGTCTATGAAACCATGACAAGTTTAGACATTCAATACTTTCTAAACCACAATTTTACAT
TGCCAGATTCATTTAAAAGTTTAAGTGAAAAACTTTATGACTTACAAAAGGAAGGGGAGATTGATGAACAAACTTTACGA
AAGTATAAAAAATAA
ATGCAGTTATTATTAGACCATGTATTACAGTATGCCATAACCCATGACGCTTCAGATGTCCACTTTATTCCAACCGCTTC
CCAAGTTGATGTAAAATTGAGAATAAAAGATAACTTAAAGACATTTGACACTCTGAATCTAGAGACATACCAAAGAATTT
TAACTTTACTCAAGTTCAAATCAGGTTTAGATGTTTCTTCACGCCATAGAGCTCAAAGTGGGCGATACATCTATGAGTAC
CAAGAACTGTATTATTTGCGTGTTTCTACATTACCACTAAACTTGGGCACTGAAAGTTGTGTAATAAGAATAACGCCGCA
AATATTTCAGACAGACAAACTTCAAACCACTAACGACATTCGTAAAATAATGGAGAAAAAACAAGGACTCATCTTATTTA
GTGGCCCAACAGGAGCTGGTAAAAGTACACTCATGTATCAAATGGTCGTTTATGCTAAAGAAATATTAAATTTAAATATT
ATTACTATAGAAGACCCTGTAGAGCAGCTCGTTAACGGCATTACTCAAATTTCTGTAAATGAAAAAGCAGACATCACATA
TGGTAGTTCTCTTAAAGCTATTTTACGTTGTGATCCTGACGTTATATTAATCGGGGAGATACGAGACAAACAAATTGCCA
AAGAAGTGACGCAAGCAAGTTTAAGTGGACATCTCGTCTTGTCAACGATTCATGCGAATGATTGTCAAGGTGTCTTATTA
AGACTCATTGAAATGGGCATTACCAAACAAGATTTAATACAATCATTAAATATGATCGTTAATCAAAGACTAATCACAAC
TAAAAACAACGATAGAAGATTAGTCTATGAAACCATGACAAGTTTAGACATTCAATACTTTCTAAACCACAATTTTACAT
TGCCAGATTCATTTAAAAGTTTAAGTGAAAAACTTTATGACTTACAAAAGGAAGGGGAGATTGATGAACAAACTTTACGA
AAGTATAAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
58.204 |
99.691 |
0.58 |
| comGA | Staphylococcus aureus N315 |
58.204 |
99.691 |
0.58 |