Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   RCF73_RS07565 Genome accession   NZ_CP133240
Coordinates   1510142..1511002 (-) Length   286 a.a.
NCBI ID   WP_419791533.1    Uniprot ID   -
Organism   Staphylococcus chromogenes strain CCM     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1487209..1541938 1510142..1511002 within 0


Gene organization within MGE regions


Location: 1487209..1541938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCF73_RS07475 (RCF73_07435) nusA 1487371..1488403 (-) 1033 Protein_1437 transcription termination factor NusA -
  RCF73_RS07480 (RCF73_07440) rimP 1488423..1488890 (-) 468 WP_037573359.1 ribosome maturation factor RimP -
  RCF73_RS07485 (RCF73_07445) - 1489017..1493327 (-) 4311 WP_419790501.1 PolC-type DNA polymerase III -
  RCF73_RS07490 (RCF73_07450) - 1493525..1495231 (-) 1707 WP_419790502.1 proline--tRNA ligase -
  RCF73_RS07495 (RCF73_07455) rseP 1495259..1496539 (-) 1281 WP_419790503.1 RIP metalloprotease RseP -
  RCF73_RS07500 (RCF73_07460) - 1496546..1497676 (-) 1131 WP_107398746.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  RCF73_RS07505 (RCF73_07465) - 1497692..1498471 (-) 780 WP_037573352.1 phosphatidate cytidylyltransferase -
  RCF73_RS07510 (RCF73_07470) - 1498485..1499246 (-) 762 WP_419790504.1 isoprenyl transferase -
  RCF73_RS07515 (RCF73_07475) frr 1499396..1499950 (-) 555 WP_419790505.1 ribosome recycling factor -
  RCF73_RS07520 (RCF73_07480) pyrH 1499970..1500692 (-) 723 WP_419790506.1 UMP kinase -
  RCF73_RS07525 (RCF73_07485) tsf 1500846..1501727 (-) 882 WP_172458446.1 translation elongation factor Ts -
  RCF73_RS07530 (RCF73_07490) rpsB 1501942..1502730 (-) 789 WP_419790507.1 30S ribosomal protein S2 -
  RCF73_RS07535 (RCF73_07495) codY 1502892..1503665 (-) 774 WP_037573333.1 GTP-sensing pleiotropic transcriptional regulator CodY -
  RCF73_RS07540 (RCF73_07500) hslU 1503680..1505089 (-) 1410 WP_419790508.1 ATP-dependent protease ATPase subunit HslU -
  RCF73_RS07545 (RCF73_07505) hslV 1505106..1505648 (-) 543 WP_037573327.1 ATP-dependent protease subunit HslV -
  RCF73_RS07550 (RCF73_07510) xerC 1505654..1506544 (-) 891 WP_037573324.1 tyrosine recombinase XerC -
  RCF73_RS07555 (RCF73_07515) trmFO 1506666..1507970 (-) 1305 WP_107363476.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  RCF73_RS07560 (RCF73_07520) topA 1507983..1510046 (-) 2064 WP_419790509.1 type I DNA topoisomerase -
  RCF73_RS07565 (RCF73_07525) dprA 1510142..1511002 (-) 861 WP_419791533.1 DNA-processing protein DprA Machinery gene
  RCF73_RS07570 (RCF73_07530) sucD 1511307..1512215 (-) 909 WP_037573316.1 succinate--CoA ligase subunit alpha -
  RCF73_RS07575 (RCF73_07535) sucC 1512236..1513402 (-) 1167 WP_107363474.1 ADP-forming succinate--CoA ligase subunit beta -
  RCF73_RS07580 (RCF73_07540) - 1513627..1513896 (-) 270 WP_107363473.1 hypothetical protein -
  RCF73_RS07585 (RCF73_07545) - 1513975..1514754 (-) 780 WP_037573308.1 ribonuclease HII -
  RCF73_RS07590 (RCF73_07550) ylqF 1514735..1515625 (-) 891 WP_419790510.1 ribosome biogenesis GTPase YlqF -
  RCF73_RS07595 (RCF73_07555) - 1515857..1516219 (+) 363 WP_037573953.1 GtrA family protein -
  RCF73_RS07600 (RCF73_07560) - 1516238..1518844 (+) 2607 WP_419790511.1 YfhO family protein -
  RCF73_RS07605 (RCF73_07565) - 1518841..1521426 (+) 2586 WP_419790512.1 YfhO family protein -
  RCF73_RS07610 (RCF73_07570) - 1521481..1522032 (-) 552 WP_157946133.1 phosphatase PAP2 family protein -
  RCF73_RS07615 (RCF73_07575) rplS 1522429..1522779 (-) 351 WP_037573298.1 50S ribosomal protein L19 -
  RCF73_RS07620 (RCF73_07580) trmD 1522881..1523618 (-) 738 WP_119512737.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  RCF73_RS07625 (RCF73_07585) rimM 1523615..1524118 (-) 504 WP_311542458.1 ribosome maturation factor RimM -
  RCF73_RS07630 (RCF73_07590) rpsP 1524222..1524497 (-) 276 WP_037573289.1 30S ribosomal protein S16 -
  RCF73_RS07635 (RCF73_07595) ffh 1524741..1526108 (-) 1368 WP_107363468.1 signal recognition particle protein -
  RCF73_RS07640 (RCF73_07600) - 1526122..1526454 (-) 333 WP_107363467.1 putative DNA-binding protein -
  RCF73_RS07645 (RCF73_07605) ftsY 1526458..1527795 (-) 1338 WP_419790513.1 signal recognition particle-docking protein FtsY -
  RCF73_RS07650 (RCF73_07610) smc 1527796..1531361 (-) 3566 Protein_1472 chromosome segregation protein SMC -
  RCF73_RS07655 (RCF73_07615) rnc 1531365..1532036 (-) 672 WP_419791534.1 ribonuclease III -
  RCF73_RS07660 (RCF73_07620) - 1532205..1532438 (-) 234 WP_019165520.1 acyl carrier protein -
  RCF73_RS07665 (RCF73_07625) fabG 1532614..1533351 (-) 738 WP_105986144.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  RCF73_RS07670 (RCF73_07630) fabD 1533344..1534270 (-) 927 WP_419790514.1 ACP S-malonyltransferase -
  RCF73_RS07675 (RCF73_07635) plsX 1534263..1535249 (-) 987 WP_119512729.1 phosphate acyltransferase PlsX -
  RCF73_RS07680 (RCF73_07640) fapR 1535242..1535811 (-) 570 WP_419790515.1 transcription factor FapR -
  RCF73_RS07685 (RCF73_07645) - 1535899..1536348 (-) 450 WP_037573255.1 ASCH domain-containing protein -
  RCF73_RS07690 (RCF73_07650) recG 1536499..1538544 (-) 2046 WP_136731822.1 ATP-dependent DNA helicase RecG -
  RCF73_RS07695 (RCF73_07655) sdaAA 1538546..1539415 (-) 870 WP_037573250.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  RCF73_RS07700 (RCF73_07660) sdaAB 1539434..1540099 (-) 666 WP_419790516.1 L-serine ammonia-lyase, iron-sulfur-dependent subunit beta -
  RCF73_RS07705 (RCF73_07665) fakA 1540257..1541915 (-) 1659 WP_419790517.1 fatty acid kinase catalytic subunit FakA -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32356.44 Da        Isoelectric Point: 8.8771

>NTDB_id=872693 RCF73_RS07565 WP_419791533.1 1510142..1511002(-) (dprA) [Staphylococcus chromogenes strain CCM]
MHYAGFTINQIYQLFTSPVKSLQFEITPILKNHPLIHQKSHFYKKFLAFQSLDIDIIQSQLEAHRIVHLSIIDARFPSLL
KEIYHPPLLLYCKGNLNLFNDVCYYPLAVVGARDFTAYGERAVEYLLHQMKHQPIVIVSGLAKGTDSLAHHYALCNNIPT
IAVLGFGHFHHYPKHTQTLRSHIDKYAGGLIISEYPPTTAPAKFRFPERNRIISGLSKGVLVTEAKERSGALITLDQALE
QNRNVYVLPGDMFNPNTKGNLLRVKEGAEIVLSAEDILKDMNTSIQ

Nucleotide


Download         Length: 861 bp        

>NTDB_id=872693 RCF73_RS07565 WP_419791533.1 1510142..1511002(-) (dprA) [Staphylococcus chromogenes strain CCM]
ATGCATTATGCTGGTTTTACGATAAATCAAATCTATCAACTATTTACATCTCCTGTGAAATCTTTACAATTTGAAATCAC
ACCTATTTTAAAAAATCATCCTCTAATCCATCAGAAGTCTCATTTTTACAAAAAATTTTTAGCTTTCCAATCCTTAGACA
TTGATATCATCCAGTCTCAATTAGAGGCGCATCGTATTGTACACCTCTCAATCATTGATGCACGATTTCCTTCATTATTA
AAAGAAATATATCATCCACCGTTATTACTCTATTGTAAGGGGAATTTAAATTTATTTAATGATGTGTGTTATTATCCTTT
AGCAGTTGTAGGCGCAAGAGATTTTACAGCTTATGGTGAACGGGCAGTTGAGTATTTATTACATCAGATGAAGCATCAGC
CTATCGTTATTGTGTCTGGTTTGGCAAAAGGAACTGATTCATTAGCCCATCATTATGCATTGTGTAACAACATCCCTACA
ATAGCTGTATTGGGCTTTGGTCATTTTCACCATTATCCTAAACATACTCAAACCCTAAGATCACATATTGATAAATATGC
AGGGGGTTTAATTATCAGCGAATATCCACCAACCACTGCTCCAGCAAAATTTAGATTTCCTGAACGCAATCGTATCATAA
GTGGCTTAAGTAAAGGAGTGCTCGTCACAGAGGCGAAAGAAAGAAGCGGTGCATTAATAACATTAGATCAAGCGTTAGAA
CAAAATCGTAATGTTTATGTTTTACCTGGAGATATGTTTAACCCCAATACAAAAGGAAATTTATTGCGTGTTAAGGAAGG
TGCCGAAATCGTACTTTCTGCGGAGGATATTTTAAAAGATATGAATACGTCAATTCAGTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(63-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

51.943

98.951

0.514
  dprA Staphylococcus aureus N315

58.65

82.867

0.486
  dprA Bacillus subtilis subsp. subtilis str. 168

38.148

94.406

0.36