Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   RCF73_RS04280 Genome accession   NZ_CP133240
Coordinates   870795..871424 (+) Length   209 a.a.
NCBI ID   WP_037575783.1    Uniprot ID   A0AAE5SZX5
Organism   Staphylococcus chromogenes strain CCM     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 865795..876424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCF73_RS04255 (RCF73_04225) - 866466..867476 (-) 1011 WP_105965742.1 FUSC family protein -
  RCF73_RS04260 (RCF73_04230) map 867808..868566 (+) 759 WP_419791347.1 type I methionyl aminopeptidase -
  RCF73_RS04265 (RCF73_04235) - 868662..869051 (+) 390 WP_419791348.1 hypothetical protein -
  RCF73_RS04270 (RCF73_04240) liaF 869064..869765 (+) 702 WP_419791349.1 cell wall-active antibiotics response protein LiaF -
  RCF73_RS04275 (RCF73_04245) vraS 869762..870805 (+) 1044 WP_037575781.1 sensor histidine kinase Regulator
  RCF73_RS04280 (RCF73_04250) vraR 870795..871424 (+) 630 WP_037575783.1 response regulator transcription factor Regulator
  RCF73_RS04285 (RCF73_04255) - 871628..872200 (-) 573 WP_103159021.1 beta-class carbonic anhydrase -
  RCF73_RS04290 (RCF73_04260) - 872243..873511 (-) 1269 WP_419791350.1 YihY/virulence factor BrkB family protein -
  RCF73_RS04295 (RCF73_04265) - 873637..873912 (-) 276 WP_037575789.1 YtxH domain-containing protein -
  RCF73_RS04300 (RCF73_04270) - 873917..874375 (-) 459 WP_419791351.1 low molecular weight protein-tyrosine-phosphatase -
  RCF73_RS04305 (RCF73_04275) - 874507..874716 (+) 210 WP_037575795.1 DUF1128 domain-containing protein -
  RCF73_RS04310 (RCF73_04280) - 874747..875976 (+) 1230 WP_419791352.1 aminopeptidase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23432.11 Da        Isoelectric Point: 5.1755

>NTDB_id=872678 RCF73_RS04280 WP_037575783.1 870795..871424(+) (vraR) [Staphylococcus chromogenes strain CCM]
MTIKVLFVDDHEMVRIGISSYLSTQPDIEVVGEGASGKEAIEKAHALKPDLILMDLVMTDMDGVEATTQIKKDLPKIKVV
MLTSYIEDKEVYRALDAGVDSYILKTTSASDIAEAIRKTSKGESVFEAEVLVKMRNRMRQRAELYELLTEREMEILLLIS
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHGLIE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=872678 RCF73_RS04280 WP_037575783.1 870795..871424(+) (vraR) [Staphylococcus chromogenes strain CCM]
ATGACAATTAAAGTTTTATTTGTAGATGACCACGAAATGGTAAGAATTGGTATCTCAAGTTATTTATCTACGCAGCCAGA
TATTGAAGTTGTTGGGGAAGGGGCTTCGGGTAAAGAAGCCATCGAAAAAGCGCATGCATTAAAACCTGATTTAATTTTAA
TGGATTTAGTGATGACGGATATGGACGGAGTAGAGGCGACGACGCAAATTAAGAAAGATTTACCTAAAATCAAAGTCGTG
ATGCTTACAAGTTATATTGAGGATAAAGAAGTCTACCGTGCATTAGATGCAGGTGTAGACAGTTATATTTTAAAAACAAC
AAGCGCCAGCGACATTGCCGAAGCCATTCGCAAAACATCTAAAGGGGAATCTGTCTTTGAAGCAGAAGTACTCGTTAAAA
TGAGGAATCGTATGCGACAACGTGCAGAACTTTACGAGCTTTTAACCGAAAGAGAAATGGAAATTTTATTATTAATTTCA
AAAGGCTATTCTAATCAAGAAATTGCGAGCGCTTCACATATAACGATTAAAACCGTTAAAACACATGTTAGTAACATTTT
AAGTAAACTTGAAGTTCAAGACCGTACACAAGCAGTGATATATGCTTTCCAACATGGGCTCATAGAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(147-202)

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

90.909

100

0.909
  degU Bacillus subtilis subsp. subtilis str. 168

35.714

100

0.383