Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   RCF75_RS08980 Genome accession   NZ_CP133229
Coordinates   1854032..1854595 (-) Length   187 a.a.
NCBI ID   WP_069828117.1    Uniprot ID   -
Organism   Staphylococcus equorum strain BTM     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1849032..1859595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCF75_RS08940 (RCF75_08935) - 1849313..1849870 (-) 558 WP_002508059.1 GNAT family N-acetyltransferase -
  RCF75_RS08945 (RCF75_08940) - 1850045..1850257 (+) 213 WP_046465163.1 TM2 domain-containing protein -
  RCF75_RS08950 (RCF75_08945) - 1850608..1850862 (-) 255 WP_056935443.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  RCF75_RS08955 (RCF75_08950) arsC 1851335..1851730 (-) 396 WP_021339513.1 arsenate reductase (thioredoxin) -
  RCF75_RS08960 (RCF75_08955) arsB 1851748..1853040 (-) 1293 WP_198644298.1 arsenite efflux transporter membrane subunit ArsB -
  RCF75_RS08965 (RCF75_08960) - 1853040..1853354 (-) 315 WP_069828118.1 ArsR/SmtB family transcription factor -
  RCF75_RS08980 (RCF75_08975) comK/comK1 1854032..1854595 (-) 564 WP_069828117.1 competence protein ComK Regulator
  RCF75_RS08985 (RCF75_08980) - 1854848..1855066 (+) 219 WP_002508071.1 IDEAL domain-containing protein -
  RCF75_RS08990 (RCF75_08985) - 1855166..1856155 (-) 990 WP_002508072.1 lipoate--protein ligase -
  RCF75_RS08995 (RCF75_08990) - 1856356..1856541 (+) 186 WP_002508073.1 YkvS family protein -
  RCF75_RS09000 (RCF75_08995) - 1856548..1857150 (+) 603 WP_002508074.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  RCF75_RS09005 (RCF75_09000) - 1857413..1858921 (-) 1509 WP_021339510.1 bifunctional metallophosphatase/5'-nucleotidase -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 22029.38 Da        Isoelectric Point: 8.9369

>NTDB_id=872633 RCF75_RS08980 WP_069828117.1 1854032..1854595(-) (comK/comK1) [Staphylococcus equorum strain BTM]
MIQQYIIKKGDMALQPCNLSIGLNEGTCVLKYKEEHDIVKERTHKIIDRSCRFYGSSYVFKKEDTMRITGINSKPPILFT
PLFPTYFFPTHSDRKEENTWINIHYVQTIRALKDKKCKITFVDNQTIVVNISAHSMHHQYLNGIYYYYMMDRAARVATFD
PESPIDYTKSQLNIYEALAKYSLFENK

Nucleotide


Download         Length: 564 bp        

>NTDB_id=872633 RCF75_RS08980 WP_069828117.1 1854032..1854595(-) (comK/comK1) [Staphylococcus equorum strain BTM]
ATGATTCAACAATACATTATTAAAAAAGGTGATATGGCTCTTCAACCTTGTAATTTATCTATAGGACTAAATGAAGGTAC
TTGTGTATTAAAGTATAAGGAGGAGCATGATATTGTAAAGGAACGGACACATAAGATTATAGATCGTTCATGTAGATTTT
ATGGTAGCAGCTATGTATTTAAAAAAGAAGACACAATGAGAATTACAGGTATTAATAGTAAACCCCCGATATTATTCACT
CCATTATTTCCTACTTATTTTTTTCCTACACATTCAGACCGAAAAGAAGAAAACACTTGGATCAATATTCATTATGTACA
AACCATAAGAGCTTTAAAAGATAAAAAATGTAAAATCACATTTGTCGATAACCAGACTATAGTTGTTAATATTTCAGCAC
ACAGTATGCATCATCAATACTTAAATGGTATATATTATTACTATATGATGGATAGAGCAGCTAGGGTGGCTACTTTTGAT
CCTGAATCTCCTATAGACTATACGAAATCACAATTAAATATTTATGAAGCATTAGCAAAATATTCTCTATTTGAAAATAA
ATAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(3-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

51.366

97.861

0.503
  comK/comK1 Staphylococcus aureus N315

51.366

97.861

0.503