Detailed information NTG0872594

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RCG66_RS20380
• Genome accession: NZ_CP133223
• Coordinates: 4183220..4184020 (+)
• Length: 266 a.a.
• NCBI ID: WP_117124802.1
• Uniprot ID: -
• Organism: Klebsiella quasipneumoniae subsp. similipneumoniae strain KQ20786
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4178220..4189020

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RCG66_RS20345	gspH	4178373..4178888 (+)	516	WP_053810751.1	type II secretion system minor pseudopilin GspH	-
RCG66_RS20350	gspI	4178885..4179250 (+)	366	WP_053810752.1	type II secretion system minor pseudopilin GspI	-
RCG66_RS20355	gspJ	4179247..4179843 (+)	597	WP_065904245.1	type II secretion system minor pseudopilin GspJ	-
RCG66_RS20360	gspK	4179840..4180820 (+)	981	WP_230354659.1	type II secretion system minor pseudopilin GspK	-
RCG66_RS20365	gspL	4180813..4182009 (+)	1197	WP_156234739.1	type II secretion system protein GspL	-
RCG66_RS20370	-	4182002..4182487 (+)	486	WP_004204409.1	type II secretion system protein M	-
RCG66_RS20375	-	4182477..4183205 (+)	729	WP_064151076.1	type II secretion system protein N	-
RCG66_RS20380	pilD	4183220..4184020 (+)	801	WP_117124802.1	A24 family peptidase	Machinery gene
RCG66_RS20385	hrpB	4184068..4186496 (-)	2429	Protein_3996	ATP-dependent helicase HrpB	-
RCG66_RS20390	thpR	4186569..4187105 (+)	537	WP_049116602.1	RNA 2',3'-cyclic phosphodiesterase	-
RCG66_RS20395	sfsA	4187105..4187821 (+)	717	WP_004204404.1	DNA/RNA nuclease SfsA	-
RCG66_RS20400	dksA	4187984..4188439 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29368.95 Da
• Isoelectric Point: 8.8894

>NTDB_id=872594 RCG66_RS20380 WP_117124802.1 4183220..4184020(+) (pilD) [Klebsiella quasipneumoniae subsp. similipneumoniae strain KQ20786]
MTTLAALSLHFPLIWYGFLLLFGLALGSFYNVVIYRLPRMLAQTADDEPLTLSTPGSSCPQCRQPIAWRDNIPLVSFLWL
GRRARCCQARISWSYPLTELTTGLLFILAGALLAPGLALAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQALPQVLLFASASGLMWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGVFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=872594 RCG66_RS20380 WP_117124802.1 4183220..4184020(+) (pilD) [Klebsiella quasipneumoniae subsp. similipneumoniae strain KQ20786]
ATGACGACATTAGCCGCATTATCGCTGCATTTCCCTCTTATCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTACCGTCTGCCGCGCATGCTGGCCCAGACCGCGGACGACGAGCCGCTAACCCTCAGCA
CGCCGGGCTCATCCTGTCCGCAGTGTCGCCAGCCGATAGCCTGGCGGGACAATATCCCGCTAGTCAGCTTCCTCTGGCTA
GGCCGTCGCGCCCGCTGCTGTCAGGCGCGCATCTCGTGGAGCTATCCGCTGACCGAGCTGACCACCGGCCTGCTGTTTAT
CCTCGCCGGGGCGCTGCTCGCACCGGGACTGGCGCTGGCGGGCGGCCTGGTGCTGCTCTCCTTTCTGCTGATACTGGCGC
GGATTGATGCCCGGACCCAGCTGCTGCCAGACCGCCTGACCCTGCCCCTGCTGTGGGCCGGACTGCTGTTCAATCTTAAC
GAGGTGTACATTGCGCTGCCGGACGCGGTCGCCGGGGCGATGGCTGGTTATCTGGCGCTGTGGTCGGTCTATTGGCTGTT
CCGCCTGCTGACCGGCAAAGAGGCTCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGCTCTGCCGCAGGTGCTGTTGTTCGCCTCGGCCAGCGGGCTGATGTGGACCCTGCTGCAGCGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGAGGGGGCGTTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.057	99.624	0.489
pilD	Vibrio campbellii strain DS40M4	45.818	100	0.474
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	44.867	98.872	0.444
pilD	Neisseria gonorrhoeae MS11	43.678	98.12	0.429