Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   RCF98_RS11060 Genome accession   NZ_CP133218
Coordinates   2268534..2269967 (-) Length   477 a.a.
NCBI ID   WP_308396446.1    Uniprot ID   -
Organism   Thiothrix lacustris strain MK1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2263534..2274967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCF98_RS11035 (RCF98_11035) - 2263630..2264166 (+) 537 WP_028490450.1 F0F1 ATP synthase subunit delta -
  RCF98_RS11040 (RCF98_11040) atpA 2264195..2265736 (+) 1542 WP_028490451.1 F0F1 ATP synthase subunit alpha -
  RCF98_RS11045 (RCF98_11045) atpG 2265752..2266609 (+) 858 WP_028490452.1 F0F1 ATP synthase subunit gamma -
  RCF98_RS11050 (RCF98_11050) atpD 2266649..2268025 (+) 1377 WP_028490453.1 F0F1 ATP synthase subunit beta -
  RCF98_RS11055 (RCF98_11055) - 2268038..2268463 (+) 426 WP_028490454.1 F0F1 ATP synthase subunit epsilon -
  RCF98_RS11060 (RCF98_11060) pilR 2268534..2269967 (-) 1434 WP_308396446.1 sigma-54 dependent transcriptional regulator Regulator
  RCF98_RS11065 (RCF98_11065) - 2270000..2271628 (-) 1629 WP_028490456.1 nitrogen regulation protein NR(II) -
  RCF98_RS11070 (RCF98_11070) - 2271586..2271828 (-) 243 WP_038142032.1 PP0621 family protein -
  RCF98_RS11075 (RCF98_11075) - 2271830..2273542 (+) 1713 WP_308898378.1 NAD+ synthase -
  RCF98_RS11080 (RCF98_11080) - 2273539..2273877 (+) 339 WP_028490459.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 52918.50 Da        Isoelectric Point: 6.0042

>NTDB_id=872557 RCF98_RS11060 WP_308396446.1 2268534..2269967(-) (pilR) [Thiothrix lacustris strain MK1]
MTEQTVLIIDDEPDIRELLEITLLRMGLDTVTAGDVQTALDKIEQYQPNLCLTDMKLPDGNGIDIVRYLQKHHPHIPVAV
ITAFGSMDTAVEALKAGAYDFVSKPVDLPKLRELIQTALKLSAGKVHQTVPDDDNSATHGSSILGNSPAMQQLKGTIHKL
ARSQAPVYIHGESGSGKELVAHQIHQQGSRVKAPFVPVNCGAIPENLMESEFFGHKKGSFTGAVADKQGLFQAAHKGTLF
LDEVADLPLTMQVKLLRAIQEGAVKPVGGLEETAVDVRILSATHKSLEHEVAAGHFRQDLYYRLNVIKLKVPPLRERQED
ILLLADFFLKKIAERWQMPPIRLSQAARDELASYTFPGNVRELENVLERASTLCDNNTIQPDDLQLPIATVDAVATPHPT
PSLRLRSGNDEGLEYKKGKIEVETLPAWNPVDEEAERDLILRALDQTRWNRTKAAEVLGMSFRQLRYRIQKYGLDEG

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=872557 RCF98_RS11060 WP_308396446.1 2268534..2269967(-) (pilR) [Thiothrix lacustris strain MK1]
ATGACCGAACAAACCGTACTGATCATCGACGATGAACCTGATATCCGCGAATTGTTGGAAATCACCCTGTTGCGCATGGG
GCTGGACACCGTCACAGCGGGCGATGTACAAACGGCGCTCGACAAAATTGAGCAATACCAGCCCAATCTGTGCCTGACTG
ACATGAAACTGCCCGATGGCAACGGTATCGACATTGTGCGTTACCTACAAAAACACCACCCACACATTCCAGTCGCCGTG
ATTACGGCGTTTGGCAGTATGGATACCGCTGTGGAAGCGCTCAAAGCCGGGGCTTACGACTTTGTATCCAAGCCCGTGGA
CTTACCTAAACTGCGCGAACTGATCCAGACTGCCCTGAAACTGTCCGCTGGCAAGGTGCACCAAACCGTGCCTGATGATG
ACAACAGCGCCACTCACGGTAGCAGTATTCTGGGGAATTCTCCCGCCATGCAGCAACTCAAAGGCACCATCCACAAACTG
GCACGCAGCCAAGCCCCTGTGTACATCCACGGCGAATCTGGCAGCGGCAAAGAGTTGGTCGCGCACCAAATCCACCAACA
AGGCTCTCGAGTCAAAGCCCCGTTTGTGCCAGTTAACTGCGGTGCTATTCCCGAAAACCTGATGGAAAGCGAATTTTTCG
GGCACAAAAAAGGCAGCTTTACCGGCGCAGTCGCCGATAAACAAGGCTTGTTTCAGGCCGCTCACAAAGGCACCTTGTTT
CTGGATGAGGTCGCCGATTTACCACTGACCATGCAGGTCAAACTCCTCCGGGCGATTCAGGAAGGCGCAGTCAAACCCGT
TGGTGGTCTGGAGGAAACTGCCGTGGATGTGCGCATCCTCAGCGCCACTCACAAAAGTCTGGAACATGAAGTGGCAGCAG
GCCATTTCCGTCAGGATTTGTATTACCGTCTGAACGTCATCAAGCTGAAAGTGCCACCATTACGCGAACGTCAGGAAGAC
ATCCTGCTATTGGCAGATTTTTTCCTGAAAAAGATTGCAGAACGCTGGCAAATGCCGCCGATCCGGCTGTCACAAGCCGC
ACGCGATGAACTCGCCAGTTACACCTTTCCTGGCAATGTACGGGAATTGGAAAATGTACTGGAGCGGGCGAGTACGCTGT
GTGACAACAATACAATTCAACCGGATGATTTGCAGTTGCCAATAGCAACAGTCGATGCCGTGGCTACGCCTCACCCCACC
CCCTCCCTTCGACTACGCTCAGGGAACGACGAGGGGCTTGAATACAAAAAGGGGAAAATAGAGGTGGAAACCTTGCCTGC
GTGGAATCCGGTAGATGAGGAGGCGGAACGCGATTTGATCCTGCGGGCGCTGGATCAGACCCGCTGGAACCGCACCAAGG
CGGCGGAAGTGCTGGGGATGTCATTCCGGCAATTGCGCTACCGGATTCAGAAGTACGGGTTGGATGAGGGGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(433-472)

Response regulator receiver domain (Response_reg)

(6-115)

Sigma-54 interaction domain (Sigma54_activat)

(143-309)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

58.737

99.581

0.585
  pilR Acinetobacter baumannii strain A118

48.428

100

0.484