Detailed information NTG0872537

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: RCG00_RS18430
• Genome accession: NZ_CP133217
• Coordinates: 3564952..3566358 (+)
• Length: 468 a.a.
• NCBI ID: WP_308135165.1
• Uniprot ID: A0AA51R436
• Organism: Thiothrix subterranea strain DNT52
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3559952..3571358

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RCG00_RS18415 (RCG00_18415)	-	3560728..3562866 (-)	2139	WP_308135162.1	hypothetical protein	-
RCG00_RS18420 (RCG00_18420)	-	3562980..3563864 (-)	885	WP_308135163.1	OmpA family protein	-
RCG00_RS18425 (RCG00_18425)	-	3564029..3564631 (-)	603	WP_308135164.1	hypothetical protein	-
RCG00_RS18430 (RCG00_18430)	pilR	3564952..3566358 (+)	1407	WP_308135165.1	sigma-54 dependent transcriptional regulator	Regulator
RCG00_RS18435 (RCG00_18435)	-	3566362..3567516 (-)	1155	WP_308135166.1	hypothetical protein	-
RCG00_RS18440 (RCG00_18440)	-	3567491..3567982 (-)	492	WP_308135167.1	hypothetical protein	-
RCG00_RS18445 (RCG00_18445)	-	3567986..3569449 (-)	1464	WP_308135168.1	hypothetical protein	-
RCG00_RS18450 (RCG00_18450)	-	3569601..3571148 (-)	1548	WP_308135169.1	hypothetical protein	-

Sequence

Protein

• Length: 468 a.a.
• Molecular weight: 51689.23 Da
• Isoelectric Point: 6.3736

>NTDB_id=872537 RCG00_RS18430 WP_308135165.1 3564952..3566358(+) (pilR) [Thiothrix subterranea strain DNT52]
MAEQTALIVDGDPAFRERLELTLLRMGLNTLSCGYVQEALGNISKHQPTFCLTEWELPDGGGLDVIGFARAHCPVMPVVV
VTGKASVEAAATAFKAGATDFVAKPLELPKLRELLQNLTQRQNGKAASAPTPSTVAGNAANDKILGNSPAMQQLKATIGK
LARSQAPVYIHGESGSGKELVAHQIHLQGARGKRMFVPVNCGAIPENLMESEFFGHKKGSFTGAVTDKQGLFQAAHQGTL
FLDEVADLPLNMQVKLLRAIQEGAVKPVGGLEEMPVDVRILSATHKPLEQEVASGRFRQDLYYRLNVITLDVPPLRERQG
DLELLVDFFLQKIANRWQMPVIKLAPDAFATLQAYHFPGNVRELENILERACTLCDDNLIRQRDLHLRPAQFEAAVTISQ
TPVTQPVLVDETIPDDVWNPEDADAEKDLVHRALEYTRWNRTRAAHILGMTFRQLTYRIQKYGLDENQ

Nucleotide

• Length: 1407 bp

>NTDB_id=872537 RCG00_RS18430 WP_308135165.1 3564952..3566358(+) (pilR) [Thiothrix subterranea strain DNT52]
ATGGCTGAGCAAACTGCACTGATTGTTGATGGCGACCCCGCCTTCCGTGAACGGCTGGAATTAACGCTGTTACGCATGGG
TTTGAATACCCTGAGCTGCGGTTATGTGCAGGAGGCACTCGGCAATATCAGCAAACACCAGCCAACATTCTGTTTAACAG
AATGGGAATTGCCTGACGGCGGAGGGCTGGATGTCATTGGATTTGCCCGCGCACATTGCCCTGTCATGCCCGTCGTGGTA
GTAACTGGCAAAGCCAGTGTTGAAGCTGCCGCCACCGCCTTCAAAGCCGGGGCAACCGATTTTGTTGCCAAACCGCTGGA
ATTGCCCAAATTACGCGAATTGCTCCAGAATTTGACCCAACGTCAGAATGGGAAAGCCGCTTCAGCACCAACGCCGTCAA
CCGTTGCAGGCAATGCTGCCAATGATAAGATTCTGGGCAATTCCCCCGCGATGCAGCAGCTCAAAGCCACTATCGGCAAG
TTGGCGCGTAGTCAGGCGCCGGTCTATATCCACGGCGAATCGGGCAGCGGTAAGGAATTGGTGGCACATCAAATTCACCT
GCAAGGCGCACGCGGCAAGAGAATGTTCGTACCGGTCAACTGCGGGGCGATTCCTGAAAATCTGATGGAAAGTGAATTTT
TTGGTCACAAAAAAGGCAGCTTCACCGGGGCTGTCACCGACAAGCAGGGATTGTTCCAAGCGGCTCATCAAGGCACGTTG
TTTCTGGATGAAGTCGCGGATTTGCCCCTGAACATGCAAGTCAAACTGTTGCGGGCTATTCAGGAAGGTGCCGTAAAGCC
AGTCGGTGGGCTGGAAGAAATGCCGGTGGATGTGCGTATTCTCAGCGCCACCCACAAGCCTCTGGAACAGGAAGTAGCCA
GCGGGCGCTTCCGGCAAGATTTGTATTACCGCCTGAATGTGATCACATTGGACGTGCCGCCCTTACGCGAACGGCAAGGT
GATCTGGAATTGCTGGTAGATTTTTTTCTGCAAAAAATAGCCAATCGCTGGCAAATGCCAGTGATAAAACTCGCGCCGGA
TGCATTCGCAACTTTGCAGGCATACCACTTCCCCGGCAATGTGCGTGAGCTGGAAAATATTCTGGAACGGGCTTGTACGT
TGTGTGATGACAATCTCATTCGGCAGCGTGATTTGCACTTGCGACCTGCCCAGTTTGAAGCGGCGGTTACCATTAGCCAA
ACACCCGTCACGCAGCCGGTGCTGGTAGATGAAACTATCCCGGATGATGTCTGGAACCCTGAAGATGCCGATGCCGAAAA
GGATCTGGTGCATCGGGCGCTGGAATATACGCGCTGGAATCGGACACGCGCCGCACATATTCTGGGCATGACATTCCGGC
AATTGACTTACCGAATTCAAAAATACGGGCTGGATGAAAACCAATAA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (144-310)

• Response regulator receiver domain (Response_reg) (7-115)

• Bacterial regulatory protein, Fis family (HTH_8) (424-462)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	54.468	100	0.547
pilR	Acinetobacter baumannii strain A118	45.781	100	0.464