Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   RCG00_RS09060 Genome accession   NZ_CP133217
Coordinates   1606051..1607484 (-) Length   477 a.a.
NCBI ID   WP_308135547.1    Uniprot ID   A0AA51MQH7
Organism   Thiothrix subterranea strain DNT52     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1601051..1612484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG00_RS09030 (RCG00_09030) - 1601789..1602691 (+) 903 WP_202716156.1 Rpn family recombination-promoting nuclease/putative transposase -
  RCG00_RS09035 (RCG00_09035) tfpZ 1602837..1603604 (-) 768 WP_308135542.1 TfpX/TfpZ family type IV pilin accessory protein -
  RCG00_RS09040 (RCG00_09040) - 1603640..1604182 (-) 543 WP_308135543.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  RCG00_RS09045 (RCG00_09045) - 1604261..1604815 (-) 555 WP_374048253.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  RCG00_RS09050 (RCG00_09050) - 1605151..1605417 (+) 267 WP_308135545.1 BrnA antitoxin family protein -
  RCG00_RS09055 (RCG00_09055) - 1605414..1605992 (-) 579 WP_308135546.1 Uma2 family endonuclease -
  RCG00_RS09060 (RCG00_09060) pilR 1606051..1607484 (-) 1434 WP_308135547.1 sigma-54 dependent transcriptional regulator Regulator
  RCG00_RS09065 (RCG00_09065) - 1607504..1609132 (-) 1629 WP_308135548.1 ATP-binding protein -
  RCG00_RS21900 - 1609090..1609332 (-) 243 WP_374048252.1 PP0621 family protein -
  RCG00_RS09070 (RCG00_09070) - 1609395..1611056 (+) 1662 WP_308135549.1 NAD+ synthase -
  RCG00_RS09075 (RCG00_09075) - 1611059..1611397 (+) 339 WP_202716169.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 52757.26 Da        Isoelectric Point: 5.8773

>NTDB_id=872530 RCG00_RS09060 WP_308135547.1 1606051..1607484(-) (pilR) [Thiothrix subterranea strain DNT52]
MTEQTVLIIDDEPDIRELLEITLLRMGLDTITAGNVENALSQIENYHPHLCLTDMKLPDGSGIDIVRYLQKNHPHIPVAV
ITAFGSMDTAVEALKAGAYDFVSKPVDLPKLRELIQTALKLSAGKGKQPAPTDDDSDTHSSSILGNSPAMQQLKATIHKL
ARSQAPVYIHGESGSGKELVAHQIHQQGSRVKAPFVPVNCGAIPENLMESEFFGHKKGSFTGAMADKQGLFQAAHKGTLF
LDEVADLPLTMQVKLLRAIQEGAVKPVGGLEEIPVDVRILSATHKSLEHEVAAGHFRQDLYYRLNVIKLKVPPLRERQED
ILLLADFFLQKIAERWQMPPIRLSPAARQELGAYGFPGNVRELENVLERASTLCDNNTIQPDDLQLPVEANMTACAVTPH
PTPSPSRGEGLEEKEKKSRGDAEALPAWNPVDEEAERDLILRALEQTRWNRTKAAEVLGMSFRQLRYRIQKYGLDEG

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=872530 RCG00_RS09060 WP_308135547.1 1606051..1607484(-) (pilR) [Thiothrix subterranea strain DNT52]
ATGACTGAACAAACCGTACTCATCATTGATGATGAACCTGACATTCGTGAACTGTTGGAAATCACCCTGTTACGCATGGG
GCTGGATACCATCACCGCTGGCAATGTGGAAAATGCCCTCAGCCAGATCGAAAATTACCATCCGCATTTGTGCCTGACCG
ATATGAAATTGCCGGATGGCAGCGGTATCGACATTGTGCGTTACCTGCAAAAAAATCACCCGCATATTCCGGTCGCGGTG
ATTACGGCGTTTGGCAGCATGGATACGGCAGTGGAGGCGCTTAAAGCGGGCGCTTACGATTTCGTGTCCAAACCCGTGGA
TTTGCCGAAACTGCGCGAGTTGATTCAAACAGCCCTGAAGCTTTCCGCTGGTAAAGGCAAACAGCCCGCGCCAACGGATG
ATGATAGCGACACCCACAGCAGCAGTATTTTGGGCAATTCTCCGGCGATGCAACAACTCAAAGCGACCATCCACAAACTG
GCACGCAGCCAAGCGCCGGTGTACATCCACGGCGAATCGGGCAGTGGTAAGGAATTGGTCGCGCACCAGATTCATCAACA
AGGTTCGCGGGTCAAAGCGCCATTCGTGCCAGTCAACTGCGGGGCGATTCCTGAAAATTTGATGGAGAGCGAATTTTTCG
GACACAAAAAAGGCAGCTTTACCGGCGCAATGGCGGATAAGCAGGGGCTGTTTCAAGCGGCGCACAAAGGCACGTTGTTT
TTGGATGAAGTGGCTGATTTACCGTTGACCATGCAGGTCAAATTGCTGCGGGCGATTCAGGAAGGCGCGGTCAAACCCGT
GGGGGGCTTGGAAGAAATTCCGGTGGATGTGCGGATTTTGAGTGCGACGCACAAGAGTTTGGAACATGAAGTGGCAGCGG
GGCATTTCCGGCAGGATTTGTATTACCGCCTGAATGTGATCAAGTTGAAAGTGCCGCCGCTGAGGGAACGCCAAGAGGAT
ATTTTGCTGTTGGCGGACTTTTTCTTGCAGAAAATTGCGGAACGTTGGCAGATGCCACCGATTCGGTTGTCGCCTGCGGC
GCGGCAAGAGTTGGGAGCGTATGGGTTTCCGGGGAATGTGCGCGAGCTGGAAAACGTGCTGGAGCGGGCGAGTACGTTGT
GTGATAACAATACGATTCAGCCGGATGATTTGCAGTTGCCGGTGGAAGCAAACATGACGGCTTGCGCCGTTACCCCTCAC
CCCACCCCCTCTCCCTCAAGGGGCGAGGGGCTTGAAGAAAAAGAGAAAAAAAGTAGAGGGGATGCGGAGGCGTTACCGGC
TTGGAATCCGGTGGATGAGGAGGCGGAGCGCGATTTGATTTTGCGGGCGTTGGAGCAGACGCGCTGGAACCGCACCAAGG
CGGCAGAAGTGTTGGGGATGTCGTTCCGGCAGTTGCGTTACCGGATTCAGAAGTATGGGTTGGATGAGGGCTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(433-472)

Sigma-54 interaction domain (Sigma54_activat)

(143-309)

Response regulator receiver domain (Response_reg)

(6-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

59.579

99.581

0.593
  pilR Acinetobacter baumannii strain A118

49.269

100

0.495