Detailed information NTG0872453

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RCF66_RS20375
• Genome accession: NZ_CP133205
• Coordinates: 4182258..4183058 (+)
• Length: 266 a.a.
• NCBI ID: WP_117124802.1
• Uniprot ID: -
• Organism: Klebsiella quasipneumoniae subsp. similipneumoniae strain KQ20605
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4177258..4188058

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RCF66_RS20340	gspH	4177411..4177926 (+)	516	WP_053810751.1	type II secretion system minor pseudopilin GspH	-
RCF66_RS20345	gspI	4177923..4178288 (+)	366	WP_053810752.1	type II secretion system minor pseudopilin GspI	-
RCF66_RS20350	gspJ	4178285..4178881 (+)	597	WP_065904245.1	type II secretion system minor pseudopilin GspJ	-
RCF66_RS20355	gspK	4178878..4179858 (+)	981	WP_230354659.1	type II secretion system minor pseudopilin GspK	-
RCF66_RS20360	gspL	4179851..4181047 (+)	1197	WP_156234739.1	type II secretion system protein GspL	-
RCF66_RS20365	-	4181040..4181525 (+)	486	WP_004204409.1	type II secretion system protein M	-
RCF66_RS20370	-	4181515..4182243 (+)	729	WP_064151076.1	type II secretion system protein N	-
RCF66_RS20375	pilD	4182258..4183058 (+)	801	WP_117124802.1	A24 family peptidase	Machinery gene
RCF66_RS20380	hrpB	4183106..4185535 (-)	2430	WP_230354660.1	ATP-dependent helicase HrpB	-
RCF66_RS20385	thpR	4185608..4186144 (+)	537	WP_049116602.1	RNA 2',3'-cyclic phosphodiesterase	-
RCF66_RS20390	sfsA	4186144..4186860 (+)	717	WP_004204404.1	DNA/RNA nuclease SfsA	-
RCF66_RS20395	dksA	4187023..4187478 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29368.95 Da
• Isoelectric Point: 8.8894

>NTDB_id=872453 RCF66_RS20375 WP_117124802.1 4182258..4183058(+) (pilD) [Klebsiella quasipneumoniae subsp. similipneumoniae strain KQ20605]
MTTLAALSLHFPLIWYGFLLLFGLALGSFYNVVIYRLPRMLAQTADDEPLTLSTPGSSCPQCRQPIAWRDNIPLVSFLWL
GRRARCCQARISWSYPLTELTTGLLFILAGALLAPGLALAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQALPQVLLFASASGLMWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGVFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=872453 RCF66_RS20375 WP_117124802.1 4182258..4183058(+) (pilD) [Klebsiella quasipneumoniae subsp. similipneumoniae strain KQ20605]
ATGACGACATTAGCCGCATTATCGCTGCATTTCCCTCTTATCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTACCGTCTGCCGCGCATGCTGGCCCAGACCGCGGACGACGAGCCGCTAACCCTCAGCA
CGCCGGGCTCATCCTGTCCGCAGTGTCGCCAGCCGATAGCCTGGCGGGACAATATCCCGCTAGTCAGCTTCCTCTGGCTA
GGCCGTCGCGCCCGCTGCTGTCAGGCGCGCATCTCGTGGAGCTATCCGCTGACCGAGCTGACCACCGGCCTGCTGTTTAT
CCTCGCCGGGGCGCTGCTCGCACCGGGACTGGCGCTGGCGGGCGGCCTGGTGCTGCTCTCCTTTCTGCTGATACTGGCGC
GGATTGATGCCCGGACCCAGCTGCTGCCAGACCGCCTGACCCTGCCCCTGCTGTGGGCCGGACTGCTGTTCAATCTTAAC
GAGGTGTACATTGCGCTGCCGGACGCGGTCGCCGGGGCGATGGCTGGTTATCTGGCGCTGTGGTCGGTCTATTGGCTGTT
CCGCCTGCTGACCGGCAAAGAGGCTCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGCTCTGCCGCAGGTGCTGTTGTTCGCCTCGGCCAGCGGGCTGATGTGGACCCTGCTGCAGCGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGAGGGGGCGTTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.057	99.624	0.489
pilD	Vibrio campbellii strain DS40M4	45.818	100	0.474
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	44.867	98.872	0.444
pilD	Neisseria gonorrhoeae MS11	43.678	98.12	0.429