Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   RCF95_RS23440 Genome accession   NZ_CP133197
Coordinates   4013513..4014919 (+) Length   468 a.a.
NCBI ID   WP_308135165.1    Uniprot ID   A0AA51R436
Organism   Thiothrix subterranea strain DNT53     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4008513..4019919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCF95_RS23415 - 4009289..4011055 (-) 1767 WP_308873838.1 hypothetical protein -
  RCF95_RS23420 - 4011072..4011428 (-) 357 WP_308873839.1 hypothetical protein -
  RCF95_RS23425 - 4011542..4012426 (-) 885 WP_308135163.1 OmpA family protein -
  RCF95_RS23430 - 4012591..4012920 (-) 330 WP_308873840.1 hypothetical protein -
  RCF95_RS23435 - 4012947..4013192 (-) 246 WP_308873841.1 hypothetical protein -
  RCF95_RS23440 pilR 4013513..4014919 (+) 1407 WP_308135165.1 sigma-54 dependent transcriptional regulator Regulator
  RCF95_RS23445 - 4014923..4016059 (-) 1137 WP_308873842.1 hypothetical protein -
  RCF95_RS23450 - 4016052..4016240 (-) 189 WP_308873843.1 hypothetical protein -
  RCF95_RS23455 - 4016283..4016543 (-) 261 WP_308873844.1 hypothetical protein -
  RCF95_RS23460 - 4016576..4018009 (-) 1434 WP_308873845.1 hypothetical protein -
  RCF95_RS23465 - 4018161..4018664 (-) 504 WP_308873846.1 hypothetical protein -
  RCF95_RS23470 - 4018661..4018954 (-) 294 WP_308873847.1 hypothetical protein -
  RCF95_RS23475 - 4018924..4019706 (-) 783 WP_308873848.1 hypothetical protein -

Sequence

Protein


Download         Length: 468 a.a.        Molecular weight: 51689.23 Da        Isoelectric Point: 6.3736

>NTDB_id=872434 RCF95_RS23440 WP_308135165.1 4013513..4014919(+) (pilR) [Thiothrix subterranea strain DNT53]
MAEQTALIVDGDPAFRERLELTLLRMGLNTLSCGYVQEALGNISKHQPTFCLTEWELPDGGGLDVIGFARAHCPVMPVVV
VTGKASVEAAATAFKAGATDFVAKPLELPKLRELLQNLTQRQNGKAASAPTPSTVAGNAANDKILGNSPAMQQLKATIGK
LARSQAPVYIHGESGSGKELVAHQIHLQGARGKRMFVPVNCGAIPENLMESEFFGHKKGSFTGAVTDKQGLFQAAHQGTL
FLDEVADLPLNMQVKLLRAIQEGAVKPVGGLEEMPVDVRILSATHKPLEQEVASGRFRQDLYYRLNVITLDVPPLRERQG
DLELLVDFFLQKIANRWQMPVIKLAPDAFATLQAYHFPGNVRELENILERACTLCDDNLIRQRDLHLRPAQFEAAVTISQ
TPVTQPVLVDETIPDDVWNPEDADAEKDLVHRALEYTRWNRTRAAHILGMTFRQLTYRIQKYGLDENQ

Nucleotide


Download         Length: 1407 bp        

>NTDB_id=872434 RCF95_RS23440 WP_308135165.1 4013513..4014919(+) (pilR) [Thiothrix subterranea strain DNT53]
ATGGCTGAGCAAACTGCACTGATTGTTGATGGCGACCCCGCCTTCCGTGAACGGCTGGAATTAACGCTGTTACGCATGGG
TTTGAATACCCTGAGCTGCGGTTATGTGCAGGAGGCACTCGGCAATATCAGCAAACACCAGCCAACATTCTGTTTAACAG
AATGGGAATTGCCTGACGGCGGAGGGCTGGATGTCATTGGATTTGCCCGCGCACATTGCCCTGTCATGCCCGTCGTGGTA
GTAACTGGCAAAGCCAGTGTTGAAGCTGCCGCCACCGCCTTCAAAGCCGGGGCAACCGATTTTGTTGCCAAACCGCTGGA
ATTGCCCAAATTACGCGAATTGCTCCAGAATTTGACCCAACGTCAGAATGGGAAAGCCGCTTCAGCACCAACGCCGTCAA
CCGTTGCAGGCAATGCTGCCAATGATAAGATTCTGGGCAATTCCCCCGCGATGCAGCAGCTCAAAGCCACTATCGGCAAG
TTGGCGCGTAGTCAGGCGCCGGTCTATATCCACGGCGAATCGGGCAGCGGTAAGGAATTGGTGGCACATCAAATTCACCT
GCAAGGCGCACGCGGCAAGAGAATGTTCGTACCGGTCAACTGCGGGGCGATTCCTGAAAATCTGATGGAAAGTGAATTTT
TTGGTCACAAAAAAGGCAGCTTCACCGGGGCTGTCACCGACAAGCAGGGATTGTTCCAAGCGGCTCATCAAGGCACGTTG
TTTCTGGATGAAGTCGCGGATTTGCCCCTGAACATGCAAGTCAAACTGTTGCGGGCTATTCAGGAAGGTGCCGTAAAGCC
AGTCGGTGGGCTGGAAGAAATGCCGGTGGATGTGCGTATTCTCAGCGCCACCCACAAGCCTCTGGAACAGGAAGTAGCCA
GCGGGCGCTTCCGGCAAGATTTGTATTACCGCCTGAATGTGATCACATTGGACGTGCCGCCCTTACGCGAACGGCAAGGT
GATCTGGAATTGCTGGTAGATTTTTTTCTGCAAAAAATAGCCAATCGCTGGCAAATGCCAGTGATAAAACTCGCGCCGGA
TGCATTCGCAACTTTGCAGGCATACCACTTCCCCGGCAATGTGCGTGAGCTGGAAAATATTCTGGAACGGGCTTGTACGT
TGTGTGATGACAATCTCATTCGGCAGCGTGATTTGCACTTGCGACCTGCCCAGTTTGAAGCGGCGGTTACCATTAGCCAA
ACACCCGTCACGCAGCCGGTGCTGGTAGATGAAACTATCCCGGATGATGTCTGGAACCCTGAAGATGCCGATGCCGAAAA
GGATCTGGTGCATCGGGCGCTGGAATATACGCGCTGGAATCGGACACGCGCCGCACATATTCTGGGCATGACATTCCGGC
AATTGACTTACCGAATTCAAAAATACGGGCTGGATGAAAACCAATAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(144-310)

Response regulator receiver domain (Response_reg)

(7-115)

Bacterial regulatory protein, Fis family (HTH_8)

(424-462)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

54.468

100

0.547
  pilR Acinetobacter baumannii strain A118

45.781

100

0.464