Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RBU49_RS14835 Genome accession   NZ_CP133189
Coordinates   3171896..3172363 (+) Length   155 a.a.
NCBI ID   WP_308151421.1    Uniprot ID   A0AA51HEX6
Organism   Clostridium sp. MB40-C1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3166896..3177363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBU49_RS14800 (RBU49_14800) - 3167209..3167982 (+) 774 WP_308151415.1 ParA family protein -
  RBU49_RS14805 (RBU49_14805) - 3167982..3168839 (+) 858 WP_308151416.1 ParB/RepB/Spo0J family partition protein -
  RBU49_RS14810 (RBU49_14810) - 3168981..3169478 (+) 498 WP_308151417.1 DUF4446 family protein -
  RBU49_RS14815 (RBU49_14815) yyaC 3169528..3170142 (-) 615 WP_308151418.1 spore protease YyaC -
  RBU49_RS14820 (RBU49_14820) - 3170385..3171035 (-) 651 WP_308151419.1 LysE family translocator -
  RBU49_RS14825 (RBU49_14825) - 3171207..3171407 (+) 201 WP_308151420.1 DUF951 domain-containing protein -
  RBU49_RS14830 (RBU49_14830) rpsF 3171597..3171884 (+) 288 WP_268060603.1 30S ribosomal protein S6 -
  RBU49_RS14835 (RBU49_14835) ssbA 3171896..3172363 (+) 468 WP_308151421.1 single-stranded DNA-binding protein Machinery gene
  RBU49_RS14840 (RBU49_14840) rpsR 3172390..3172620 (+) 231 WP_268060601.1 30S ribosomal protein S18 -
  RBU49_RS14845 (RBU49_14845) - 3172841..3173158 (+) 318 WP_308151422.1 MazG-like family protein -
  RBU49_RS14850 (RBU49_14850) - 3173170..3174171 (+) 1002 WP_308151423.1 DUF2232 domain-containing protein -
  RBU49_RS14855 (RBU49_14855) - 3174173..3176164 (+) 1992 WP_308151424.1 DHH family phosphoesterase -
  RBU49_RS14860 (RBU49_14860) rplI 3176164..3176604 (+) 441 WP_308151425.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17048.79 Da        Isoelectric Point: 4.6777

>NTDB_id=872383 RBU49_RS14835 WP_308151421.1 3171896..3172363(+) (ssbA) [Clostridium sp. MB40-C1]
MNKVVLIGRLTKDPELRFTPGNGKAVASFTVAVDRKFSSSGQKEADFIPVVVWGKQAEATANYMSKGKLIGVSGRIQTRS
YEAKDGTRRYVTEVIADEVQFLEWGNSNNRGETPFDNTGFSAGNNNPSTGFSNDFNHTAEYEEEITPIDDGDIPF

Nucleotide


Download         Length: 468 bp        

>NTDB_id=872383 RBU49_RS14835 WP_308151421.1 3171896..3172363(+) (ssbA) [Clostridium sp. MB40-C1]
ATGAATAAAGTTGTTTTGATAGGTAGGCTAACTAAAGACCCAGAGTTAAGGTTTACTCCAGGAAACGGGAAAGCTGTTGC
AAGCTTTACTGTAGCTGTAGATAGGAAGTTCTCTTCTAGTGGTCAGAAAGAAGCAGACTTTATTCCTGTAGTTGTGTGGG
GAAAGCAAGCTGAAGCCACAGCTAACTATATGAGTAAAGGTAAGCTAATAGGGGTTTCTGGAAGAATTCAAACTAGATCT
TACGAAGCTAAAGATGGAACTAGAAGGTATGTTACAGAAGTAATTGCTGATGAAGTTCAATTTTTAGAGTGGGGAAATTC
AAACAACAGAGGAGAAACGCCATTCGATAATACAGGTTTTAGTGCTGGAAACAATAATCCATCAACTGGATTTTCTAATG
ACTTTAATCATACGGCGGAGTACGAAGAAGAAATTACTCCAATAGATGATGGTGATATTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

47.399

100

0.529
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.282

66.452

0.381