Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   RAM80_RS25300 Genome accession   NZ_CP133165
Coordinates   5494594..5495229 (+) Length   211 a.a.
NCBI ID   WP_416423132.1    Uniprot ID   -
Organism   Pseudomonas sp. App30     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5489594..5500229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAM80_RS25280 (RAM80_25200) - 5489846..5490778 (+) 933 WP_416423128.1 ABC transporter ATP-binding protein -
  RAM80_RS25285 (RAM80_25205) - 5490775..5491554 (+) 780 WP_416423129.1 ABC transporter permease -
  RAM80_RS25290 (RAM80_25210) - 5491649..5492161 (-) 513 WP_416423130.1 DUF2062 domain-containing protein -
  RAM80_RS25295 (RAM80_25215) comA 5492309..5494531 (+) 2223 WP_416423131.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RAM80_RS25300 (RAM80_25220) exbB 5494594..5495229 (+) 636 WP_416423132.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RAM80_RS25305 (RAM80_25225) - 5495226..5495651 (+) 426 WP_416423133.1 ExbD/TolR family protein -
  RAM80_RS25310 (RAM80_25230) lpxK 5495651..5496652 (+) 1002 WP_416423134.1 tetraacyldisaccharide 4'-kinase -
  RAM80_RS25315 (RAM80_25235) - 5496694..5496879 (+) 186 WP_027977460.1 Trm112 family protein -
  RAM80_RS25320 (RAM80_25240) kdsB 5496876..5497640 (+) 765 WP_416423135.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RAM80_RS25325 (RAM80_25245) - 5497640..5498104 (+) 465 WP_416423136.1 low molecular weight protein-tyrosine-phosphatase -
  RAM80_RS25330 (RAM80_25250) murB 5498101..5499120 (+) 1020 WP_416423137.1 UDP-N-acetylmuramate dehydrogenase -
  RAM80_RS25335 (RAM80_25255) - 5499142..5499729 (+) 588 WP_416423138.1 nucleotidyltransferase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23174.33 Da        Isoelectric Point: 6.4958

>NTDB_id=872269 RAM80_RS25300 WP_416423132.1 5494594..5495229(+) (exbB) [Pseudomonas sp. App30]
MWELVKSGGWMMLPIILSSIAALGITAERLWTLRASRVTPPHLLGQVWRWIRDKQLDKEKLKELRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHEMERYISTLGTIAAMAPLLGLLGTVLGMIEIFSSFMGANMATNPAVLAGGISKALVTTA
SGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEMVQGDREVDLAEDKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=872269 RAM80_RS25300 WP_416423132.1 5494594..5495229(+) (exbB) [Pseudomonas sp. App30]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCCGCGCTGGGCATCACCGC
CGAGCGCCTGTGGACCTTGCGTGCCAGCCGCGTGACCCCGCCGCACCTGCTGGGTCAGGTCTGGCGCTGGATCCGCGACA
AGCAGCTGGACAAGGAAAAGCTCAAGGAGCTGCGCGCCGATTCGCCGCTGGGTGAAATCCTCGCCGCGGGCCTGGCCAAC
TCGCGCCATGGCCGCGAAATCATGAAGGAATGCATCGAAGAGGCCGCGGCCCGCGTCATTCACGAAATGGAACGCTACAT
CAGCACCCTGGGCACCATCGCCGCCATGGCGCCGCTGCTGGGGCTGCTGGGTACCGTGCTGGGCATGATTGAAATCTTCA
GCTCGTTCATGGGCGCCAACATGGCCACTAACCCGGCGGTGCTGGCCGGTGGTATCTCCAAGGCGCTGGTGACCACCGCC
TCGGGCCTGATGGTGGGTATCCCGGCGGTGTTCTTCCACCGTTTCCTGCAACGTCGCATCGACGAGCTGGTAGTGGGCAT
GGAGCAGGAAGCGATCAAGCTGGTGGAAATGGTGCAGGGTGACCGCGAGGTCGATCTGGCCGAGGACAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825