NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	Q9Q86_RS10890	Genome accession	NZ_CP133162
Coordinates	2230494..2231354 (+)	Length	286 a.a.
NCBI ID	WP_112987175.1	Uniprot ID	A0A365PJ16
Organism	Acinetobacter sp. A22
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2225494..2236354

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q9Q86_RS10870	secG	2226040..2226369 (-)	330	WP_004916847.1	preprotein translocase subunit SecG	-
Q9Q86_RS10875	tpiA	2226382..2227173 (-)	792	WP_112987172.1	triose-phosphate isomerase	-
Q9Q86_RS10880	pilB	2227519..2229243 (+)	1725	WP_112987173.1	type IV-A pilus assembly ATPase PilB	Machinery gene
Q9Q86_RS10885	pilC	2229268..2230494 (+)	1227	WP_112987174.1	type II secretion system F family protein	Machinery gene
Q9Q86_RS10890	pilD	2230494..2231354 (+)	861	WP_112987175.1	A24 family peptidase	Machinery gene
Q9Q86_RS10895	coaE	2231356..2231955 (+)	600	WP_112987176.1	dephospho-CoA kinase	-
Q9Q86_RS10900	-	2231952..2232863 (-)	912	WP_112987177.1	DMT family transporter	-
Q9Q86_RS10905	rlmB	2232894..2233643 (-)	750	WP_004916859.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
Q9Q86_RS10910	-	2233833..2234159 (-)	327	WP_004958605.1	pyrimidine/purine nucleoside phosphorylase	-
Q9Q86_RS10915	-	2234195..2234347 (-)	153	WP_171293753.1	hypothetical protein	-
Q9Q86_RS10920	recN	2234682..2236343 (+)	1662	WP_099949296.1	DNA repair protein RecN	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 31998.53 Da Isoelectric Point: 7.4720

                                >NTDB_id=872198 Q9Q86_RS10890 WP_112987175.1 2230494..2231354(+) (pilD) [Acinetobacter sp. A22]

MQSFFFYFLENPTALYLAVGLISLCIGSFLNVVIFRTPKMMEQEWHQECQMLLHPEQPIIDQSKLTLSQPASTCPKCQTP

IKWFQNIPIISWLVLRGKCGTCQNPISIRYPLIELLTMICSLIVVAVFGATIQMLFGLTLTWALIALTFIDFDTQLLPDR

FTLPLAALGLGINTFAIYTTASAAIWGYLIGFLCLWIVYYLFKIITGKEGMGYGDFKLLAALGAWMGPMMLPLIVLLSSM

VGAIIGIMLMKMRGENQPFAFGPYIAIAGWIAFLWGEQIMKVYLGG

Nucleotide

Download Length: 861 bp

                                >NTDB_id=872198 Q9Q86_RS10890 WP_112987175.1 2230494..2231354(+) (pilD) [Acinetobacter sp. A22]

ATGCAATCTTTTTTCTTTTACTTCCTTGAAAATCCAACTGCACTTTACCTTGCAGTTGGATTAATCAGCTTGTGCATCGG

CAGTTTTTTAAATGTTGTGATCTTTCGCACTCCAAAAATGATGGAGCAAGAATGGCATCAGGAATGCCAAATGCTTTTAC

ACCCTGAACAGCCGATCATAGATCAGAGCAAGTTAACATTAAGTCAGCCAGCTTCTACTTGTCCTAAGTGTCAAACGCCT

ATTAAATGGTTCCAGAATATTCCTATTATTAGTTGGTTAGTACTTCGCGGTAAATGTGGCACTTGCCAAAATCCAATCAG

CATTCGCTACCCGTTGATTGAATTACTTACTATGATCTGTTCATTGATCGTTGTGGCAGTATTCGGTGCAACAATTCAGA

TGCTGTTCGGCTTAACTCTAACGTGGGCACTTATTGCACTCACTTTTATTGATTTTGATACACAGTTACTACCTGATCGA

TTTACGCTACCTTTAGCAGCATTAGGGCTGGGTATCAATACTTTTGCAATCTATACAACGGCTAGTGCTGCGATCTGGGG

CTATTTAATCGGTTTTCTATGTCTTTGGATTGTGTATTACCTATTTAAAATCATCACGGGCAAAGAAGGCATGGGCTATG

GTGATTTTAAACTGCTTGCAGCCCTTGGTGCATGGATGGGTCCGATGATGTTACCCCTCATCGTATTACTCTCTTCTATG

GTAGGCGCAATTATTGGTATTATGCTGATGAAAATGCGCGGTGAAAATCAACCTTTTGCATTTGGTCCTTATATTGCAAT

TGCCGGTTGGATTGCCTTTCTATGGGGTGAGCAAATTATGAAAGTGTATCTTGGGGGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A365PJ16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter baumannii D1279779	82.168	100	0.822
pilD	Acinetobacter nosocomialis M2	82.168	100	0.822
pilD	Vibrio cholerae strain A1552	51.736	100	0.521
pilD	Vibrio campbellii strain DS40M4	51.504	93.007	0.479
pilD	Neisseria gonorrhoeae MS11	46.154	95.455	0.441

Detailed information NTG0872198