Detailed information NTG0871918

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: RBU55_RS26975
• Genome accession: NZ_CP133110
• Coordinates: 5978766..5980094 (+)
• Length: 442 a.a.
• NCBI ID: WP_307948801.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. aurantiaca strain IRHB3
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5973766..5985094

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RBU55_RS26955 (RBU55_26955)	pgeF	5975264..5975989 (-)	726	WP_307948800.1	peptidoglycan editing factor PgeF	-
RBU55_RS26960 (RBU55_26960)	rluD	5975986..5976948 (-)	963	WP_025807530.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
RBU55_RS26965 (RBU55_26965)	-	5977101..5978123 (+)	1023	WP_009050934.1	outer membrane protein assembly factor BamD	-
RBU55_RS26970 (RBU55_26970)	-	5978258..5978491 (+)	234	WP_025807532.1	PP0621 family protein	-
RBU55_RS26975 (RBU55_26975)	pilR	5978766..5980094 (+)	1329	WP_307948801.1	sigma-54 dependent transcriptional regulator	Regulator
RBU55_RS26980 (RBU55_26980)	thiO	5980091..5981191 (-)	1101	WP_025807534.1	glycine oxidase ThiO	-
RBU55_RS26985 (RBU55_26985)	-	5981246..5981647 (-)	402	WP_097305151.1	type IV pilin protein	-
RBU55_RS26990 (RBU55_26990)	-	5981661..5984732 (-)	3072	WP_307948803.1	pilus assembly protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48963.28 Da
• Isoelectric Point: 8.4935

>NTDB_id=871918 RBU55_RS26975 WP_307948801.1 5978766..5980094(+) (pilR) [Pseudomonas chlororaphis subsp. aurantiaca strain IRHB3]
MSPRQKVLIVDDDPGVREYLEISLGRMQRHTRSARNLGEARHWLAREGFDLCLSDLHLPDGTGLELLEHIQHRRLRMPLA
ILSTCARQETAVQALKAGAIDFLSKPVALSRLRELLNSTLPGSTPAPPATGPLLGDSAAMHKLRGQIDKLAQSQASVYIS
GESGSGKELVARAIHDQGPRANRAFVPVNCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDARILCATHKALQAEVRAGRFRQDLYYRLNVIELPVPPLRARKDDIEPLATAILE
RLAQGDGQQLARLQPSALLALQGYDFPGNVRELENLLERAHTLCASRKIDVQDLRMTPNSTHPAIAPDPAQVIDLEDYLQ
EVERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=871918 RBU55_RS26975 WP_307948801.1 5978766..5980094(+) (pilR) [Pseudomonas chlororaphis subsp. aurantiaca strain IRHB3]
ATGAGCCCACGGCAAAAAGTCCTGATCGTCGATGACGATCCAGGCGTTCGCGAATATCTGGAAATCAGCCTTGGCCGGAT
GCAACGCCATACCCGCAGCGCCCGCAACCTGGGCGAAGCGCGTCACTGGCTGGCCCGGGAAGGCTTCGACCTGTGCCTGA
GCGACCTGCATTTGCCCGACGGCACTGGGCTGGAATTACTCGAGCATATCCAGCACCGTCGGCTGCGAATGCCGTTGGCG
ATACTCAGCACCTGCGCCCGCCAGGAAACCGCGGTCCAGGCCCTGAAGGCCGGTGCCATCGACTTCCTGAGCAAACCCGT
GGCCCTGTCTCGCTTGCGCGAACTGCTAAACAGCACCCTACCCGGATCGACACCAGCGCCCCCTGCTACCGGCCCCTTGC
TCGGCGATTCGGCCGCCATGCACAAACTGCGCGGACAGATCGACAAACTGGCCCAGAGTCAGGCCTCGGTCTATATCAGC
GGTGAGTCCGGCAGCGGCAAGGAATTGGTCGCCCGTGCCATCCACGACCAGGGGCCACGGGCCAACCGCGCCTTCGTGCC
GGTCAACTGCGGGGCCATTCCGCCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGTGCCA
TCGAAGACAAGCCCGGCCTGTTCCAGGCGGCGCACGGCGGCACCCTGTTTCTCGATGAGGTGGCCGATCTGCCGCTGGCG
ATGCAGGTCAAATTGCTCCGTGCGCTCCAGGAGAAGGCCGTGCGCTGTGTCGGCGGGCAGCAGGAAGTCCAGGTCGATGC
GCGCATTCTCTGCGCCACCCACAAGGCATTGCAGGCGGAAGTGCGTGCCGGGCGCTTTCGCCAGGACCTCTACTACCGCC
TGAACGTGATCGAACTGCCGGTGCCACCGCTACGGGCGCGCAAGGACGATATCGAGCCCTTGGCCACAGCCATCCTCGAG
CGACTGGCGCAGGGCGACGGCCAACAACTGGCACGGCTTCAGCCAAGTGCTCTGCTGGCACTCCAGGGCTACGACTTTCC
CGGCAACGTGCGCGAACTGGAAAACCTGCTCGAACGGGCGCATACCCTGTGCGCGAGCCGGAAGATCGACGTGCAGGATC
TGCGCATGACACCAAATAGCACCCACCCAGCCATCGCGCCCGACCCGGCACAGGTGATCGACCTTGAAGATTATCTGCAA
GAAGTCGAGCGCCGACTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAATCGCACGGCGGCGGCCCAGCGTTTGAGTCT
GTCGTTTCGTTCGATGCGCTACAGGCTGAAGAAACTCGGCCTGGATTAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	66.892	100	0.672
pilR	Acinetobacter baumannii strain A118	43.791	100	0.455