Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   RBU55_RS09250 Genome accession   NZ_CP133110
Coordinates   2002034..2002669 (+) Length   211 a.a.
NCBI ID   WP_025804353.1    Uniprot ID   A0AAQ1FKP2
Organism   Pseudomonas chlororaphis subsp. aurantiaca strain IRHB3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1997034..2007669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBU55_RS09230 (RBU55_09230) - 1997280..1998212 (+) 933 WP_025804356.1 ABC transporter ATP-binding protein -
  RBU55_RS09235 (RBU55_09235) - 1998209..1998988 (+) 780 WP_007931651.1 ABC transporter permease -
  RBU55_RS09240 (RBU55_09240) - 1999037..1999552 (-) 516 WP_025804355.1 DUF2062 domain-containing protein -
  RBU55_RS09245 (RBU55_09245) comA 1999700..2001931 (+) 2232 WP_307950376.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RBU55_RS09250 (RBU55_09250) exbB 2002034..2002669 (+) 636 WP_025804353.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RBU55_RS09255 (RBU55_09255) - 2002666..2003094 (+) 429 WP_009047818.1 biopolymer transporter ExbD -
  RBU55_RS09260 (RBU55_09260) lpxK 2003094..2004104 (+) 1011 WP_307950377.1 tetraacyldisaccharide 4'-kinase -
  RBU55_RS09265 (RBU55_09265) - 2004128..2004313 (+) 186 WP_007931663.1 Trm112 family protein -
  RBU55_RS09270 (RBU55_09270) kdsB 2004310..2005074 (+) 765 WP_102676842.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RBU55_RS09275 (RBU55_09275) - 2005074..2005538 (+) 465 WP_007931667.1 low molecular weight protein-tyrosine-phosphatase -
  RBU55_RS09280 (RBU55_09280) murB 2005535..2006554 (+) 1020 WP_025804350.1 UDP-N-acetylmuramate dehydrogenase -
  RBU55_RS09285 (RBU55_09285) - 2006808..2007278 (+) 471 WP_025804349.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22918.08 Da        Isoelectric Point: 7.4247

>NTDB_id=871908 RBU55_RS09250 WP_025804353.1 2002034..2002669(+) (exbB) [Pseudomonas chlororaphis subsp. aurantiaca strain IRHB3]
MWELVISGGWMMLPIILSSIAAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKDKLKELRAHSPLGEILAAGLAN
SKHGREVMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
SGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=871908 RBU55_RS09250 WP_025804353.1 2002034..2002669(+) (exbB) [Pseudomonas chlororaphis subsp. aurantiaca strain IRHB3]
GTGTGGGAATTGGTCATATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGCCGCGGTCGGCATCATTGC
CGAGCGCCTGTGGACCCTGCGGGCCAGCCGTGTTACTCCGCCGCATCTGCTGGGGCAGGTCTGGCGCTGGATCAAGGACA
AGCAACTCAATAAGGACAAACTCAAGGAACTGCGCGCCCATTCTCCCCTGGGGGAAATCCTCGCGGCCGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGGTCATGAAGGAGTGCATCGAAGAGGCTGCTGCCCGGGTCATCCACGAACTGGAGCGCTACCT
CAATGCCCTCGGCACTATTGCCGCCATGGCGCCGCTGCTGGGCTTGCTGGGTACGGTGCTGGGCATGATCGATATCTTCA
GCTCGTTCATGGGCTCGGGCATGACCACCAACGCCGCGGTGCTGGCCGGTGGTATCTCCAAGGCGCTGATTACCACCGCG
TCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGTTTCCTGCAACGCCGGGTCGATGAACTGGTGGTGGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAAGTGGTGCAGGGCGACCGCGACGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.73

100

0.867