Detailed information NTG0871907

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: RBU55_RS09245
• Genome accession: NZ_CP133110
• Coordinates: 1999700..2001931 (+)
• Length: 743 a.a.
• NCBI ID: WP_307950376.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. aurantiaca strain IRHB3
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1994700..2006931

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RBU55_RS09220 (RBU55_09220)	-	1995822..1996481 (+)	660	WP_102676847.1	transglutaminase family protein	-
RBU55_RS09225 (RBU55_09225)	-	1996524..1997147 (+)	624	WP_307950375.1	glutathione S-transferase family protein	-
RBU55_RS09230 (RBU55_09230)	-	1997280..1998212 (+)	933	WP_025804356.1	ABC transporter ATP-binding protein	-
RBU55_RS09235 (RBU55_09235)	-	1998209..1998988 (+)	780	WP_007931651.1	ABC transporter permease	-
RBU55_RS09240 (RBU55_09240)	-	1999037..1999552 (-)	516	WP_025804355.1	DUF2062 domain-containing protein	-
RBU55_RS09245 (RBU55_09245)	comA	1999700..2001931 (+)	2232	WP_307950376.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
RBU55_RS09250 (RBU55_09250)	exbB	2002034..2002669 (+)	636	WP_025804353.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
RBU55_RS09255 (RBU55_09255)	-	2002666..2003094 (+)	429	WP_009047818.1	biopolymer transporter ExbD	-
RBU55_RS09260 (RBU55_09260)	lpxK	2003094..2004104 (+)	1011	WP_307950377.1	tetraacyldisaccharide 4'-kinase	-
RBU55_RS09265 (RBU55_09265)	-	2004128..2004313 (+)	186	WP_007931663.1	Trm112 family protein	-
RBU55_RS09270 (RBU55_09270)	kdsB	2004310..2005074 (+)	765	WP_102676842.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
RBU55_RS09275 (RBU55_09275)	-	2005074..2005538 (+)	465	WP_007931667.1	low molecular weight protein-tyrosine-phosphatase	-
RBU55_RS09280 (RBU55_09280)	murB	2005535..2006554 (+)	1020	WP_025804350.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81291.37 Da
• Isoelectric Point: 10.0464

>NTDB_id=871907 RBU55_RS09245 WP_307950376.1 1999700..2001931(+) (comA) [Pseudomonas chlororaphis subsp. aurantiaca strain IRHB3]
MRTGMLALAAGLLSLRFLPALPAIGWLAVLPVVALMLLPFRTYPLAFFLLGLAWACISAQWALDDRLAEPLDGQTRWLEG
RVVGLPQQAEGLVRFELEGGRARRGRIPQRLRLAWYGGPPVHSGERWRLAVKLKRPAGLVNLQAFDHEAWLLAQRIGATG
TVKDGQLLAATQESWRARIRQRLLQVDAHGRASGLAALVLGDGSGLSREDWRVLQDTGTVHLMVISGQHISLLAAVMYAL
VAGLARYGLWPGRWPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNAVLLFEPL
ASLQPGFWLSFTAVAVLILIFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLFLAVPYLGEGLLWLAGGLLDVLFRGLALLAAQWPAWIAPAIPLWAWSISALGAFLLLLPAGVPLRPLGWPMLLLMV
FPPKNTLPYGEAEVWQLDVGQGLAVLVRTREHAMLYDAGPRFGDSDLGARVVLPSLRKLGIARLDLMLLSHADADHAGGA
DAIQRGLPVARLVSGDPEGLPAYLPAEPCASGEQWQWDGVRFSLWQWADAQNGNQKSCVMQVEAKGERLLLTGDIDAQAE
RALLNTPLAVETHWLQAPHHGSRSSSSLALLKALAPSAVLISRGHGNGFGHPHPQVVERYRQQGTAIYDSAEQGALQLML
GTYAEPTSLRAQRRFWRKWPLSP

Nucleotide

• Length: 2232 bp

>NTDB_id=871907 RBU55_RS09245 WP_307950376.1 1999700..2001931(+) (comA) [Pseudomonas chlororaphis subsp. aurantiaca strain IRHB3]
ATGCGCACAGGGATGCTGGCGTTGGCGGCGGGGCTGCTGAGCCTGCGCTTTTTGCCGGCGCTGCCAGCGATCGGATGGCT
GGCCGTACTGCCGGTGGTGGCCTTGATGCTGCTACCGTTTCGCACCTATCCATTGGCCTTTTTTCTGCTGGGCCTGGCGT
GGGCCTGCATCAGCGCGCAATGGGCGCTGGACGATCGTTTGGCGGAACCGCTCGACGGACAGACCCGATGGCTTGAAGGC
CGGGTGGTGGGGCTGCCGCAGCAGGCCGAGGGCCTGGTGCGTTTCGAACTGGAAGGCGGGCGGGCGCGGCGCGGGCGGAT
CCCGCAACGCTTGCGCCTGGCCTGGTATGGCGGGCCACCGGTGCACAGCGGCGAGCGCTGGCGCCTGGCGGTGAAGCTCA
AGCGACCTGCCGGGCTGGTCAATCTGCAGGCCTTCGATCACGAGGCCTGGCTGCTGGCCCAGCGTATTGGCGCCACGGGG
ACGGTCAAGGATGGGCAGCTTCTGGCCGCGACGCAGGAGAGTTGGCGTGCGCGCATTCGCCAGCGCTTGCTGCAAGTCGA
TGCCCATGGGCGCGCTAGTGGCCTGGCGGCCCTGGTACTGGGTGACGGCTCGGGGCTGAGCCGGGAAGACTGGCGTGTCC
TGCAAGACACTGGGACCGTGCATCTGATGGTGATTTCCGGGCAGCACATCAGCTTGCTGGCCGCCGTGATGTACGCCCTG
GTGGCGGGGCTGGCCCGCTACGGCCTGTGGCCCGGACGTTGGCCCTGGCTACCTTGGGCCTGTGGGTTGGCGTTCGCTTC
GGCCCTGGGGTACGGGTTGCTGGCGGGGTTCGATGTGCCGGTGCGTCGTGCCTGCGTGATGGTTGCCCTGGTGCTGATCT
GGCGTCTGCGCTTTCGTCACCTGGGCGCCTGGTGGCCGTTCCTGTTGGCGTTGAATGCGGTGCTGTTGTTCGAGCCGCTG
GCCAGTCTGCAGCCAGGATTCTGGCTGTCCTTTACCGCGGTGGCGGTGCTGATCCTGATCTTCGGCGGGCGCCTGGGAGG
CTGGCGCTGGTGGCAGTCCTGGACCCGTATCCAATGGTTGATCGCCATCGGCCTGTGCCCGGTGCTGTTGGCGCTGGGTT
TGCCCATCAGCCTCAGCGGGCCACTGGCCAATCTGTTGGCGGAACCCTGGATCAGCCTGCTGGTGTTGCCGCCGGCGTTG
CTCGGCACCTTATTCCTGGCGGTGCCTTACCTGGGCGAAGGCTTGCTCTGGCTGGCCGGTGGTTTGCTGGACGTACTGTT
TCGCGGTCTGGCGCTGCTGGCTGCCCAATGGCCGGCCTGGATAGCGCCGGCCATACCGCTCTGGGCCTGGAGCATCAGCG
CGCTGGGGGCCTTTCTGTTGTTGCTGCCCGCCGGCGTGCCGCTGCGTCCCTTGGGATGGCCGATGTTGCTGTTGATGGTG
TTCCCGCCGAAAAACACGTTGCCGTATGGCGAGGCGGAGGTCTGGCAACTGGATGTCGGGCAGGGCCTGGCGGTGCTGGT
GCGGACTCGCGAGCACGCGATGCTGTATGACGCCGGTCCGCGTTTTGGCGACTCCGACCTGGGCGCCCGGGTGGTGCTGC
CGTCCTTGCGCAAGCTGGGCATTGCCCGCCTCGACCTGATGCTGCTCAGCCACGCCGATGCCGATCACGCCGGTGGCGCC
GACGCCATCCAGCGCGGCTTGCCGGTGGCCAGGCTGGTCAGCGGCGATCCCGAGGGATTGCCGGCCTATTTGCCGGCAGA
GCCTTGCGCCAGCGGCGAGCAGTGGCAATGGGACGGAGTACGTTTTTCCCTGTGGCAATGGGCAGATGCGCAGAACGGCA
ACCAGAAGTCCTGCGTGATGCAGGTCGAGGCCAAGGGCGAGCGTTTGCTGCTGACGGGGGATATCGATGCCCAGGCGGAA
CGCGCGCTGTTGAATACTCCGCTGGCCGTCGAAACCCACTGGTTACAGGCGCCGCACCACGGCAGCCGCAGCTCGTCGTC
CCTGGCCTTGCTCAAGGCCCTTGCGCCTTCGGCGGTGCTGATCTCCCGGGGACACGGCAATGGCTTCGGGCATCCGCACC
CGCAGGTCGTCGAGCGTTATCGCCAGCAAGGGACCGCCATTTACGACAGTGCGGAGCAAGGAGCGCTGCAGTTGATGCTG
GGCACATACGCCGAACCGACGAGCCTGCGGGCGCAGCGACGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Competence protein (Competence) (198-463)

• Domain of unknown function (DUF4131) (DUF4131) (23-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.534	96.77	0.624