Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   RBU55_RS02355 Genome accession   NZ_CP133110
Coordinates   514762..516834 (+) Length   690 a.a.
NCBI ID   WP_063427909.1    Uniprot ID   -
Organism   Pseudomonas chlororaphis subsp. aurantiaca strain IRHB3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 509762..521834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBU55_RS02335 (RBU55_02335) pilM 511992..513044 (+) 1053 WP_307949866.1 pilus assembly protein PilM Machinery gene
  RBU55_RS02340 (RBU55_02340) - 513044..513610 (+) 567 WP_307949868.1 PilN domain-containing protein -
  RBU55_RS02345 (RBU55_02345) - 513607..514224 (+) 618 WP_307949870.1 type 4a pilus biogenesis protein PilO -
  RBU55_RS02350 (RBU55_02350) - 514221..514748 (+) 528 WP_307949872.1 pilus assembly protein PilP -
  RBU55_RS02355 (RBU55_02355) pilQ 514762..516834 (+) 2073 WP_063427909.1 type IV pilus secretin PilQ Machinery gene
  RBU55_RS02360 (RBU55_02360) aroK 516839..517357 (+) 519 WP_009041824.1 shikimate kinase AroK -
  RBU55_RS02365 (RBU55_02365) aroB 517506..518606 (+) 1101 WP_025808185.1 3-dehydroquinate synthase -
  RBU55_RS02370 (RBU55_02370) - 518617..520206 (+) 1590 WP_307949875.1 SPOR domain-containing protein -

Sequence

Protein


Download         Length: 690 a.a.        Molecular weight: 74561.66 Da        Isoelectric Point: 5.1970

>NTDB_id=871903 RBU55_RS02355 WP_063427909.1 514762..516834(+) (pilQ) [Pseudomonas chlororaphis subsp. aurantiaca strain IRHB3]
MNRIFSAFGIALWMALLSPMAMAASLKALDVAALPGDRLELKLTFDGPVPEPRGYTTDQPARIALDLPGVVSQLANKSRD
LGNGNARSVTVVESGQRTRVVVNLVALAPYSTRVAGNQLFVVIGQGATAAQSAPGLPAVASGPAKAAASAGRSIRSVDFQ
RGEQGEGNVLIDLSDSGMSPDIQERDGKLVLAFAKARLPEPLRVRLDVKDFATPVQFVSARAETGKAIITIEPGGTFDYS
TYQTDNKLTVSVRPMTSGDLQKRNVERSAYNGEKLSLNFQDIEVRSVLQLIADFTNLNLVASDTVQGGITLRLQNVPWDQ
ALDLVLKTKGLDKRQVGNVLLVAPADEIAARERQELESQKQIADLEPLRRELLQVNYAKAAEIAKLFQSVTRAEDKSDER
GSITVDERTNNIIAYQTRERLDELRRIVSQLDIPVRQVMIEARIVEANVDYDKSLGVRWGGSIQNQGNWNASGVSNGTNG
SSTIGTPGSTSSNSPFVDLGTTANTSGLGIAFITDNVLLDLELTAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQE
AASSGATSVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNKVQDVPPIKKNEVNAKVLINDGETIVIGGVFSNTQ
SKVVDKVPFLGDVPYLGRLFRRDVVSEKKSELLVFLTPRIMNNQAIAVSH

Nucleotide


Download         Length: 2073 bp        

>NTDB_id=871903 RBU55_RS02355 WP_063427909.1 514762..516834(+) (pilQ) [Pseudomonas chlororaphis subsp. aurantiaca strain IRHB3]
ATGAACAGGATCTTTTCAGCCTTCGGTATTGCGCTATGGATGGCGTTGCTTTCACCGATGGCCATGGCGGCCAGCCTCAA
GGCCCTGGATGTCGCGGCATTGCCGGGGGATCGCCTGGAGTTGAAACTCACCTTCGATGGCCCGGTGCCCGAGCCGCGGG
GTTATACCACCGACCAGCCGGCGCGGATTGCCCTCGATCTGCCGGGTGTCGTCAGCCAGCTGGCGAACAAGAGCCGCGAT
CTGGGCAATGGCAATGCGCGCAGCGTGACGGTGGTCGAATCGGGGCAGCGTACCCGGGTGGTGGTCAACCTGGTCGCGCT
GGCGCCCTACAGCACCCGGGTCGCCGGCAATCAGCTGTTTGTGGTGATCGGCCAGGGGGCGACGGCGGCGCAGAGTGCAC
CGGGGCTGCCTGCTGTCGCGTCCGGGCCGGCCAAGGCCGCGGCTTCCGCGGGGCGGTCGATTCGTAGCGTGGATTTCCAG
CGCGGCGAGCAGGGCGAGGGCAATGTACTGATCGACCTCTCCGATTCGGGAATGAGCCCGGATATACAGGAGCGCGACGG
CAAGCTCGTCCTCGCCTTCGCCAAGGCCCGCCTGCCAGAGCCCTTGCGGGTCAGGCTCGACGTCAAGGATTTCGCCACGC
CGGTGCAGTTCGTCAGTGCCCGGGCGGAGACCGGCAAGGCCATCATCACCATCGAACCTGGCGGCACCTTCGATTACTCG
ACCTACCAGACGGACAACAAGCTTACGGTGAGCGTCAGGCCGATGACCTCGGGCGATCTGCAGAAGCGCAACGTCGAGCG
CTCGGCCTACAACGGCGAAAAGCTCTCGCTGAACTTCCAGGACATCGAGGTTCGCTCGGTGCTGCAACTGATCGCCGACT
TCACCAACCTCAACCTGGTGGCCAGCGATACGGTGCAGGGCGGCATTACCTTGCGCCTGCAGAATGTGCCGTGGGACCAG
GCTCTCGATCTGGTGCTCAAGACCAAGGGGCTGGACAAGCGCCAGGTGGGTAATGTGTTGCTGGTGGCGCCGGCCGATGA
AATCGCCGCTCGCGAACGCCAGGAGCTGGAGTCACAGAAGCAGATAGCCGACCTGGAGCCGCTGCGGCGCGAACTGCTAC
AGGTCAACTACGCCAAGGCCGCGGAAATCGCCAAGTTGTTCCAGTCGGTCACCCGCGCCGAGGACAAGTCCGATGAGCGT
GGTTCGATCACCGTCGATGAACGGACCAACAACATCATTGCCTACCAGACCCGGGAGCGCCTGGACGAGCTGCGGCGGAT
TGTCAGCCAGCTGGATATCCCAGTGCGCCAGGTGATGATCGAAGCGCGGATCGTCGAGGCCAACGTCGACTACGACAAAA
GCCTGGGCGTGCGCTGGGGCGGTTCGATCCAGAATCAGGGCAACTGGAATGCCTCGGGAGTCAGCAATGGCACCAACGGC
TCTTCCACCATAGGCACGCCGGGCAGTACCAGCAGCAATTCGCCCTTCGTCGACCTGGGCACCACCGCCAATACCTCCGG
CCTGGGCATCGCCTTCATCACCGACAACGTGTTGCTGGACCTTGAACTGACGGCCATGGAAAAGACCGGTAACGGTGAAA
TCGTCTCCCAGCCCAAGGTCGTCACGTCCGACAAGGAGACGGCGAAGATCCTCAAGGGTACGGAAATCCCCTATCAGGAA
GCCGCTTCCAGTGGGGCGACCTCGGTGTCCTTCAAGGAGGCCTCGCTGTCCCTGGAGGTGACGCCGCAGATCACCCCGGA
TAACCGCATCATCATGGAGGTCAAGGTCACCAAGGACGAGCCGGACTACCTGAACAAGGTCCAGGACGTGCCGCCAATCA
AGAAAAACGAGGTCAACGCCAAGGTCCTGATCAACGACGGAGAAACCATCGTCATAGGTGGAGTTTTCTCCAATACGCAA
AGCAAGGTTGTAGATAAGGTGCCATTTCTCGGCGATGTGCCGTATCTTGGCCGACTTTTCCGGCGTGACGTGGTGTCGGA
GAAAAAATCCGAGCTGCTGGTATTTCTCACTCCGCGTATCATGAACAACCAGGCGATTGCTGTGAGTCATTGA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(372-437)

Bacterial type II and III secretion system protein (Secretin)

(525-681)

AMIN domain (AMIN)

(40-122)

Secretin and TonB N terminus short domain (STN)

(298-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

70.097

100

0.73
  comQ Acinetobacter baylyi ADP1

40.11

100

0.423
  pilQ Acinetobacter baumannii strain A118

38.165

100

0.416
  pilQ Acinetobacter baumannii D1279779

38.165

100

0.416
  pilQ Legionella pneumophila strain Lp02

38.131

97.681

0.372
  pilQ Legionella pneumophila strain ERS1305867

38.209

97.101

0.371