NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	RBU63_RS04205	Genome accession	NZ_CP133092
Coordinates	927560..928426 (-)	Length	288 a.a.
NCBI ID	WP_307944230.1	Uniprot ID	-
Organism	Pseudomonas mosselii strain JP2-207
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 922560..933426

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RBU63_RS04170	-	922994..924289 (-)	1296	WP_186594159.1	NAD(P)/FAD-dependent oxidoreductase	-
RBU63_RS04175	-	924374..924547 (-)	174	WP_186594161.1	DUF3094 family protein	-
RBU63_RS04180	-	924680..925309 (-)	630	WP_069016168.1	DUF1780 domain-containing protein	-
RBU63_RS04185	-	925365..925796 (-)	432	WP_069016167.1	hypothetical protein	-
RBU63_RS04190	-	925883..926590 (+)	708	WP_186594179.1	energy-coupling factor ABC transporter permease	-
RBU63_RS04195	yacG	926740..926940 (-)	201	WP_011535705.1	DNA gyrase inhibitor YacG	-
RBU63_RS04200	coaE	926937..927560 (-)	624	WP_232854055.1	dephospho-CoA kinase	-
RBU63_RS04205	pilD	927560..928426 (-)	867	WP_307944230.1	A24 family peptidase	Machinery gene
RBU63_RS04210	-	928429..929637 (-)	1209	WP_307944233.1	type II secretion system F family protein	-
RBU63_RS04215	-	929865..930275 (+)	411	WP_062575174.1	pilin	-
RBU63_RS04225	-	930574..931902 (+)	1329	WP_307944236.1	integrase arm-type DNA-binding domain-containing protein	-

Sequence

Protein

Download Length: 288 a.a. Molecular weight: 31529.70 Da Isoelectric Point: 7.2985

                                >NTDB_id=871808 RBU63_RS04205 WP_307944230.1 927560..928426(-) (pilD) [Pseudomonas mosselii strain JP2-207]

MNAWAVVVDHPPFFYALAAVLGLLVGSFLNVLAYRLPLMLERQWQREAQEVLGLPQAEHERFDLCLPASRCPHCQRPIRA

WENIPVLSYLALRGRCSGCKARISARYPLVELATALLSLLVAWHFGPGVEALAVMLLTWGLIVLSLIDAEHQLLPDVLVL

PLLWLGVVVNAFGLLVPLADAVWGAVAGYLSLWAVYWVFKLVTGKEGMGFGDFKLLAMLGAWGGWQVLPLTLMLASLVGA

LIGLTLVRLKRTQMGAALPFGPYLAIAGWIALLWGDEIVASYLQLLGT

Nucleotide

Download Length: 867 bp

                                >NTDB_id=871808 RBU63_RS04205 WP_307944230.1 927560..928426(-) (pilD) [Pseudomonas mosselii strain JP2-207]

ATGAATGCCTGGGCCGTCGTCGTTGATCATCCGCCGTTCTTCTATGCCCTGGCCGCGGTGCTGGGGTTGCTGGTGGGCAG

TTTTCTCAATGTGCTGGCGTACCGGCTGCCGCTGATGCTCGAGCGCCAGTGGCAGCGCGAGGCGCAGGAGGTGCTGGGGC

TGCCGCAGGCCGAGCACGAGCGCTTCGACCTGTGTTTGCCGGCTTCGCGTTGCCCCCATTGCCAGCGCCCGATCCGGGCG

TGGGAAAACATTCCAGTGCTGAGTTACCTGGCCTTGCGCGGGCGTTGCTCGGGGTGCAAGGCGCGGATCAGTGCGCGTTA

TCCACTGGTGGAGCTGGCCACCGCCCTGCTGTCGTTGCTGGTGGCGTGGCATTTCGGGCCGGGCGTGGAGGCGCTGGCGG

TGATGCTGCTGACCTGGGGGCTGATCGTCTTGAGCCTGATCGATGCCGAGCACCAGTTGCTGCCGGATGTGCTGGTGCTG

CCGCTGTTGTGGCTGGGGGTGGTGGTCAACGCCTTCGGGCTGCTGGTGCCGCTGGCCGACGCGGTGTGGGGCGCGGTGGC

GGGTTACCTGAGCCTGTGGGCGGTGTACTGGGTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTTTGGCGACTTCA

AGCTGCTGGCCATGCTCGGGGCGTGGGGCGGTTGGCAGGTTTTGCCGCTGACCTTGATGCTGGCCTCGCTGGTGGGGGCG

CTGATCGGGCTGACGCTGGTGCGTTTGAAGCGCACGCAGATGGGCGCTGCGCTGCCTTTCGGGCCTTATCTGGCCATTGC

GGGGTGGATCGCATTGCTCTGGGGTGATGAAATAGTCGCTTCTTACCTGCAACTGCTTGGAACCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(135-244)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-125)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	55.556	96.875	0.538
pilD	Acinetobacter baumannii D1279779	52.03	94.097	0.49
pilD	Vibrio campbellii strain DS40M4	50.181	96.181	0.483
pilD	Acinetobacter nosocomialis M2	50.923	94.097	0.479
pilD	Neisseria gonorrhoeae MS11	51.301	93.403	0.479

Detailed information NTG0871808