Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   RBH91_RS13970 Genome accession   NZ_CP133085
Coordinates   2847880..2849610 (-) Length   576 a.a.
NCBI ID   WP_307891972.1    Uniprot ID   -
Organism   Bacillus swezeyi strain EA208     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2842880..2854610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBH91_RS13945 - 2843194..2843430 (-) 237 WP_307891968.1 hypothetical protein -
  RBH91_RS13950 - 2843962..2844396 (-) 435 WP_307891969.1 tyrosine-type recombinase/integrase -
  RBH91_RS13955 - 2844480..2844782 (-) 303 WP_307891970.1 phage integrase SAM-like domain-containing protein -
  RBH91_RS13960 spo0A 2845324..2846124 (-) 801 WP_307891971.1 sporulation transcription factor Spo0A Regulator
  RBH91_RS13965 spoIVB 2846416..2847699 (-) 1284 WP_239693694.1 SpoIVB peptidase -
  RBH91_RS13970 recN 2847880..2849610 (-) 1731 WP_307891972.1 DNA repair protein RecN Machinery gene
  RBH91_RS13975 ahrC 2849643..2850092 (-) 450 WP_076761811.1 transcriptional regulator AhrC/ArgR -
  RBH91_RS13980 - 2850199..2851044 (-) 846 WP_307891973.1 TlyA family RNA methyltransferase -
  RBH91_RS13985 dxs 2851041..2852942 (-) 1902 WP_076761956.1 1-deoxy-D-xylulose-5-phosphate synthase -
  RBH91_RS13990 - 2853207..2854097 (-) 891 WP_307891974.1 farnesyl diphosphate synthase -
  RBH91_RS13995 - 2854087..2854347 (-) 261 WP_076761814.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64404.04 Da        Isoelectric Point: 4.7369

>NTDB_id=871741 RBH91_RS13970 WP_307891972.1 2847880..2849610(-) (recN) [Bacillus swezeyi strain EA208]
MLAELSIKNFAIIEELTISFEKGLTVLTGETGAGKSIIIDAVSLLVGGRGSSEYVRYGEKRAELEGLFLLDSGHPVFDLC
GELGVEASDEMIVMRRDINANGKSICRVNGKLVTIAALREVGRLLLDIHGQHDNQLLMEDDQHLQLLDRYAGEDIDQALK
AYQEVYNRYMNVMKKVKQLSESEQEMAHRLDLIQFQLDEIESANLQPKEDELLQDERQQISNFEKIYEALQNAYNALRHE
RAGLDWVGMASSELENVSGINDGLKKMSESVANAYYILEDSTFQIRNMLDELEYDPERLDFIESRLNEIKQLKRKYGATV
EDIQAYSAQIEEEIDRIQNRDSHLQTLQAELESVGKDVAIEAANVSDIRKSWAKKLAKQIKQELNELYMEKSTFDTEFQI
KTADARDDAPIVNGTPVQLTKQGIDSVRFLISTNTGEPLKSLSKVASGGELSRIMLAMKSIFSAQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHRVSIGSQVLCITHLPQVAAMADTHLLITKQSKDGRTTTSVTPLSKQEKISEIGRMIAGVEVTDLTKR
HAKELLHQANLVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=871741 RBH91_RS13970 WP_307891972.1 2847880..2849610(-) (recN) [Bacillus swezeyi strain EA208]
TTGTTAGCTGAATTATCGATCAAAAACTTTGCCATTATTGAAGAATTAACCATTTCATTTGAAAAAGGGCTGACCGTATT
AACCGGAGAAACAGGCGCCGGAAAATCGATCATCATCGATGCCGTATCATTGCTTGTCGGAGGCAGGGGATCGTCTGAAT
ATGTCAGGTATGGAGAAAAAAGAGCCGAATTAGAGGGGCTTTTTCTGCTTGACAGCGGACATCCGGTTTTTGATCTGTGC
GGCGAACTCGGAGTTGAAGCTTCAGACGAAATGATCGTCATGAGAAGAGACATTAACGCAAACGGCAAGAGTATCTGCCG
TGTCAATGGAAAACTTGTAACCATCGCCGCTCTTCGGGAAGTCGGCAGACTGCTGCTGGACATCCACGGTCAGCACGACA
ACCAGCTGCTCATGGAAGATGATCAGCACCTGCAGCTTTTGGACAGATATGCAGGCGAAGACATTGATCAAGCATTAAAA
GCGTATCAAGAAGTATACAACCGCTACATGAATGTCATGAAAAAGGTTAAACAGCTTTCTGAGAGCGAACAGGAAATGGC
GCATCGGCTCGATTTGATCCAATTCCAGCTCGATGAAATCGAATCCGCAAATCTCCAGCCGAAAGAGGACGAGCTCTTAC
AGGATGAACGGCAGCAAATTTCAAATTTTGAGAAAATATATGAAGCGCTGCAAAATGCCTATAATGCGCTGCGCCATGAG
CGGGCGGGGCTCGATTGGGTCGGAATGGCTTCAAGTGAGCTTGAGAATGTCTCCGGCATTAACGATGGACTCAAAAAAAT
GTCTGAATCAGTTGCCAATGCATACTATATTCTTGAGGATTCAACCTTTCAGATCAGAAACATGCTTGATGAATTGGAAT
ACGATCCTGAACGGCTCGATTTCATTGAATCGCGCTTGAATGAAATCAAGCAGCTAAAACGTAAATACGGCGCTACTGTC
GAAGATATTCAAGCTTATTCGGCCCAAATTGAGGAAGAAATCGACCGCATCCAAAATCGGGACAGCCACCTTCAAACATT
GCAAGCAGAGCTAGAGTCGGTCGGCAAAGATGTCGCGATTGAGGCAGCCAATGTATCAGACATCCGGAAATCCTGGGCGA
AAAAGCTCGCCAAGCAAATCAAGCAGGAATTAAATGAGCTTTACATGGAGAAGTCGACATTTGATACAGAATTTCAAATC
AAAACGGCGGATGCCCGTGATGATGCGCCAATCGTCAACGGCACTCCTGTCCAGCTGACAAAACAAGGTATTGACAGCGT
TCGCTTTTTAATCTCAACAAATACGGGAGAACCGCTCAAATCTTTGTCAAAAGTCGCTTCAGGTGGTGAATTGTCAAGAA
TCATGCTGGCGATGAAAAGCATTTTTTCGGCGCAGCAGGATGTCACCTCGATCATTTTTGATGAAGTGGACACAGGCGTC
AGCGGAAGAGTCGCACAGGCGATCGCCGAAAAAATTCACCGTGTATCGATTGGTTCTCAAGTTTTGTGCATTACCCATTT
GCCGCAAGTGGCCGCGATGGCGGATACCCACCTTTTGATTACGAAACAATCGAAAGACGGGAGAACGACGACAAGCGTTA
CACCTTTGTCAAAACAGGAAAAAATATCTGAAATCGGCCGGATGATTGCCGGCGTTGAAGTGACAGATTTGACAAAGCGC
CATGCAAAAGAACTTTTACATCAAGCCAACCTCGTCAAAACCACCGGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

80.382

100

0.804