Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   RBH91_RS13960 Genome accession   NZ_CP133085
Coordinates   2845324..2846124 (-) Length   266 a.a.
NCBI ID   WP_307891971.1    Uniprot ID   -
Organism   Bacillus swezeyi strain EA208     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2840324..2851124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBH91_RS13925 - 2840432..2840734 (-) 303 WP_307894753.1 hypothetical protein -
  RBH91_RS13930 - 2841181..2842194 (-) 1014 WP_307891965.1 LD-carboxypeptidase -
  RBH91_RS13935 - 2842396..2842665 (+) 270 WP_307891966.1 LCI fold-containing protein -
  RBH91_RS13940 - 2842766..2843164 (-) 399 WP_307891967.1 tyrosine-type recombinase/integrase -
  RBH91_RS13945 - 2843194..2843430 (-) 237 WP_307891968.1 hypothetical protein -
  RBH91_RS13950 - 2843962..2844396 (-) 435 WP_307891969.1 tyrosine-type recombinase/integrase -
  RBH91_RS13955 - 2844480..2844782 (-) 303 WP_307891970.1 phage integrase SAM-like domain-containing protein -
  RBH91_RS13960 spo0A 2845324..2846124 (-) 801 WP_307891971.1 sporulation transcription factor Spo0A Regulator
  RBH91_RS13965 spoIVB 2846416..2847699 (-) 1284 WP_239693694.1 SpoIVB peptidase -
  RBH91_RS13970 recN 2847880..2849610 (-) 1731 WP_307891972.1 DNA repair protein RecN Machinery gene
  RBH91_RS13975 ahrC 2849643..2850092 (-) 450 WP_076761811.1 transcriptional regulator AhrC/ArgR -
  RBH91_RS13980 - 2850199..2851044 (-) 846 WP_307891973.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29510.10 Da        Isoelectric Point: 6.6109

>NTDB_id=871740 RBH91_RS13960 WP_307891971.1 2845324..2846124(-) (spo0A) [Bacillus swezeyi strain EA208]
MEKIKVCVADDNRELVGLLSEYIEGQTDMEVLGVAYNGQECLSLFKDKEPDVLVLDIIMPHLDGLAVLERLRESQLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGSPMAHRAPSAQSSVLRPQPESPKKNLDASITTII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=871740 RBH91_RS13960 WP_307891971.1 2845324..2846124(-) (spo0A) [Bacillus swezeyi strain EA208]
GTGGAGAAAATTAAAGTATGTGTTGCTGATGATAACAGGGAGCTTGTCGGCCTATTAAGCGAATATATTGAGGGGCAAAC
CGACATGGAAGTGCTCGGTGTGGCATATAACGGACAGGAATGCCTTTCTTTGTTTAAAGACAAGGAGCCTGATGTGCTTG
TGCTGGATATTATTATGCCTCATCTTGACGGTTTGGCTGTGCTTGAAAGGCTGCGGGAGTCCCAGCTGAAAAAACAGCCG
AACGTCATTATGCTGACGGCGTTCGGCCAGGAAGACGTGACGAAAAAAGCTGTTGATTTGGGTGCGTCGTATTTTATCCT
TAAGCCATTTGATATGGAGAATCTAGTCGGTCATATCCGTCAAGTCAGCGGAAACGGTTCTCCAATGGCACACCGCGCGC
CGTCTGCGCAAAGCAGTGTGCTTCGTCCGCAGCCGGAATCGCCAAAGAAAAACTTAGATGCCAGCATCACGACCATCATC
CATGAAATTGGCGTCCCAGCACATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACATCGA
ATTGCTCGGCAGCATTACAAAAGTTCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCAAGCCGTGTAGAAAGAG
CAATCCGCCATGCGATTGAAGTCGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGGTATACAGTCAGC
ATGACAAAAGCTAAGCCTACCAACAGCGAATTCATCGCGATGGTTGCCGATAAACTGCGGCTCGAGCATAAGGCTTCTTA
A

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

92.135

100

0.925