Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   RBH91_RS02115 Genome accession   NZ_CP133085
Coordinates   390643..391089 (-) Length   148 a.a.
NCBI ID   WP_307893301.1    Uniprot ID   -
Organism   Bacillus swezeyi strain EA208     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 385643..396089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBH91_RS02085 - 385686..386546 (-) 861 WP_307894623.1 transporter substrate-binding domain-containing protein -
  RBH91_RS02090 - 386757..387308 (+) 552 WP_307893298.1 NAD(P)H-dependent oxidoreductase -
  RBH91_RS02095 - 387305..387853 (+) 549 Protein_378 ABC transporter ATP-binding protein -
  RBH91_RS02100 - 387952..388677 (+) 726 WP_307893299.1 AAA family ATPase -
  RBH91_RS02105 - 388748..390184 (+) 1437 WP_307893300.1 family 1 glycosylhydrolase -
  RBH91_RS02110 nin/comJ 390224..390622 (-) 399 WP_076758188.1 competence protein ComJ Regulator
  RBH91_RS02115 nucA/comI 390643..391089 (-) 447 WP_307893301.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  RBH91_RS02120 - 391397..391567 (+) 171 WP_164470202.1 hypothetical protein -
  RBH91_RS02125 - 391573..392385 (+) 813 WP_307893302.1 protein kinase domain-containing protein -
  RBH91_RS02130 - 392406..393917 (+) 1512 WP_307893303.1 FAD-dependent monooxygenase -
  RBH91_RS02135 - 394307..394684 (-) 378 WP_076758194.1 helix-turn-helix domain-containing protein -
  RBH91_RS02140 - 394824..395342 (+) 519 WP_076758196.1 DJ-1/PfpI family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16199.15 Da        Isoelectric Point: 5.2691

>NTDB_id=871712 RBH91_RS02115 WP_307893301.1 390643..391089(-) (nucA/comI) [Bacillus swezeyi strain EA208]
MDKIKSLLISLVVIAAVIIGMTTGDFFSSEHEPAGHKRSSGYDEMLDFPADRYPETGAHIRTAIKKGHSKICTIDRDGAD
ERRKESLKDVPAKSGYDRDEWPMAMCEEGGTGASVEYISPSDNRGAGSWVGNQVSDYPDGTKVLFNIK

Nucleotide


Download         Length: 447 bp        

>NTDB_id=871712 RBH91_RS02115 WP_307893301.1 390643..391089(-) (nucA/comI) [Bacillus swezeyi strain EA208]
ATGGACAAAATTAAATCTTTGCTGATCAGCTTGGTCGTAATAGCGGCCGTGATCATCGGAATGACAACGGGAGATTTCTT
TTCTTCAGAACACGAGCCCGCCGGGCATAAGAGAAGCTCCGGCTATGATGAAATGCTTGATTTCCCAGCGGATCGCTATC
CTGAAACAGGAGCCCACATTCGAACCGCCATAAAAAAAGGGCACTCGAAGATCTGCACGATTGACAGGGACGGTGCGGAT
GAAAGGCGGAAGGAATCATTAAAGGACGTTCCCGCAAAATCAGGCTATGATCGTGACGAATGGCCAATGGCCATGTGTGA
AGAAGGCGGAACAGGAGCGTCGGTTGAGTATATCAGCCCGTCTGATAACCGCGGAGCGGGGTCTTGGGTCGGCAATCAGG
TGAGCGACTACCCTGACGGAACAAAAGTGCTTTTCAACATCAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

65.306

99.324

0.649